Gene CPF_2040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_2040 
Symbol 
ID4202102 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand- 
Start bp2280620 
End bp2281081 
Gene Length462 bp 
Protein Length153 aa 
Translation table11 
GC content29% 
IMG OID638082907 
Productrrf2 family protein 
Protein accessionYP_696471 
Protein GI110800338 
COG category[K] Transcription 
COG ID[COG1959] Predicted transcriptional regulator 
TIGRFAM ID[TIGR00738] rrf2 family protein (putative transcriptional regulator) 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTAT CTACCAAAGG AAGATATGGT GTAAAAGCCA TGGTTGATTT AGCTATACAT 
TATGGTGGAT CACCTGTGTC AATAAAGTCA ATATCGCAAA GACAGAATAT ATCTGAATAT 
TATTTAGAGC AATTATTTAG TTCTTTAAGA AAAGCTAAGC TTATAAAGAG TATTAGAGGT 
GCTCAAGGAG GATATATTTT AAATAGACAA CCAGAAGATA TAACAGTTTC AGATATTATA 
GAGGTTTTAG AAGGACCAAT AGAAATATCA GATTGTTTAG ATGGTGTAAC TTGCAATAAT 
GTTGATTGTT GTGCAACTAG ACTTTTATGG AAAAAGATAA AAACAAGCAT AGATGAGGTT 
ACTAATTCAG TAACACTTAA AGATATAGTA GAAGATTATA AAGCTATGAA AGAAAAAAAT 
GAAGCTTTAA AAATTGTTAG TAGGAGTGAA GAAAATGAAT AA
 
Protein sequence
MKLSTKGRYG VKAMVDLAIH YGGSPVSIKS ISQRQNISEY YLEQLFSSLR KAKLIKSIRG 
AQGGYILNRQ PEDITVSDII EVLEGPIEIS DCLDGVTCNN VDCCATRLLW KKIKTSIDEV 
TNSVTLKDIV EDYKAMKEKN EALKIVSRSE ENE