Gene CPF_2038 details

Gene Information

• Locus tag: CPF_2038
• Symbol: nifU
• ID: 4202204
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: -
• Start bp: 2279000
• End bp: 2279428
• Gene Length: 429 bp
• Protein Length: 142 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 638082905
• Product: FeS cluster assembly scaffold protein NifU
• Protein accession: YP_696469
• Protein GI: 110798682
• COG category: [C] Energy production and conversion
• COG ID: [COG0822] NifU homolog involved in Fe-S cluster formation
• TIGRFAM ID: [TIGR01994] SUF system FeS assembly protein, NifU family; [TIGR01999] FeS cluster assembly scaffold IscU; [TIGR03419] FeS cluster assembly scaffold protein NifU, Clostridium type

Plasmid Coverage information

• Num covering plasmid clones: 33
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATATATA GTGAAAAAGT TATGGATCAT TTCAAAAACC CAAGAAATGT AGGAGAAATT 
AAAGATGCTA ACGGAATCGG AGAAGTTGGT AACGCTAAAT GTGGAGATAT AATGAGAATA 
TATCTTAAAA TAGAAAATAA CATTGTAGAA GATGTTAAAT TTGAAACTTA TGGATGTGGA 
TCTGCTATTG CTTCATCAAG TATGGCTACA GAGCTTATAA AAGGAAAAAC TGTAGAAGAA 
GCTTGGGAAT TATCAAACAA AGCTGTTGCA GAAGCTTTAG ATGGTCTTCC ACCAGTAAAA 
ATGCACTGTT CAGTATTAGC TGAGGAAGCT ATACACAAGG CTATAAACGA CTATAGACAA 
AGACAAGGAT TAGAGCCTTG GGATATGAAA GAACATTCAC ATGACATACA TGAGCATGTT 
CACGGTTAA 

 

Protein sequence

MIYSEKVMDH FKNPRNVGEI KDANGIGEVG NAKCGDIMRI YLKIENNIVE DVKFETYGCG 
SAIASSSMAT ELIKGKTVEE AWELSNKAVA EALDGLPPVK MHCSVLAEEA IHKAINDYRQ 
RQGLEPWDMK EHSHDIHEHV HG