| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2024 |
|---|
| Symbol | |
|---|
| ID | 4203066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 2264591 |
|---|
| End bp | 2265820 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 638082893 |
|---|
| Product | U32 family peptidase |
|---|
| Protein accession | YP_696457 |
|---|
| Protein GI | 110799271 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0826] Collagenase and related proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAAAC CAGAAATATT AGCACCAGCA GGTAGCTTAG AAAAATTAAA GACAGCAATT
GATTTTGGAG CAGATGCAGT TTATATTGGA GGAAGCAAAC TTAACCTAAG AGCTTTCGCT
GATAACTTTA CAAATGAACA GATTGCAGAA GGTGTAAAGT ATGCTCATGA TAGAGGAAGA
AAAGTTTATG TTACTATGAA TGTATTTCCT CACAATGCAG ATTTAGAAGG ATTAGAAGAA
TACATTGTAG GACTTAATGA TTTAAATGTA GATGCAATAA TAGTTTCAGA TCCATCAATA
ATAATGACTG CAAAGGAAGT TGCACCAGAT TTAGAAATAC ACTTAAGTAC TCAAGCAAAC
AATGTAAACT GGAAGTCAGC TAAGTTTTGG CATAGCTTAG GAGTTAAGAG AATTGTTTTA
GCTAGAGAGC TTAGTTTTAA AGAAATTGAA AAAATACACG AGAATTTACC AGAAGATTGT
GATTTAGAAG CATTTGTTCA TGGTTCAATG TGTATGGCAT ACTCAGGAAG ATGTTTAATA
TCAAACTACA TGACAGGAAG AGACTCAAAT AGAGGAGCTT GTTCACAAGC ATGTAGATAT
AAGTATTATT TAATGGAAGA AAAGAGACCT GGAGAGTATT TCCAAGTTAT AGAAGATGAT
AAAGGTACAT ACATAATGAA CTCTAAGGAT TTATGTATGA TAGAATATAT ACCAGAGCTT
GTTAAGAGTG GTATATACTC ATTTAAAATA GAAGGAAGAA TGAAGAGCCC ATACTATGTT
GCTGCAATTG TTAAAGCTTA CAGAGAAGCT TTAGATAAGT ATTGGGATGA TCCAGAAGGA
TATGAATTTG ATCAAAAATT AATGGATAAT CTTTTAAAGG TTAGTCATAG AAGATATCAC
ACAGGATTTT ACTTTGGAAA ATCAGGAGAG CAAGTTTATG AATCATCATC TTATATAAGA
GATTATGATA TCGTAGGAGT TGTTAGAGAT TATAACGAAG AAACTAAGGT AGCAACTATA
GAACAAAGAA ACAGATTATT CGAAGGGGAT ACAGTAGAGG TATTAACTCC AGTAGGAGAT
TACTATGAAA TCCAAATGAA TGATATGAAG GATGAAAAAG ACGAAAAAAT AGATGTTGCT
AACAAAGCTC AAATGATATT CAAGGTTAAA ATAGATAAGC CTGTAAAGGT AAATGATATG
TTAATTAAGT GCAAGGAGGC AAACAGCTAA
|
|---|
| Protein sequence | MRKPEILAPA GSLEKLKTAI DFGADAVYIG GSKLNLRAFA DNFTNEQIAE GVKYAHDRGR
KVYVTMNVFP HNADLEGLEE YIVGLNDLNV DAIIVSDPSI IMTAKEVAPD LEIHLSTQAN
NVNWKSAKFW HSLGVKRIVL ARELSFKEIE KIHENLPEDC DLEAFVHGSM CMAYSGRCLI
SNYMTGRDSN RGACSQACRY KYYLMEEKRP GEYFQVIEDD KGTYIMNSKD LCMIEYIPEL
VKSGIYSFKI EGRMKSPYYV AAIVKAYREA LDKYWDDPEG YEFDQKLMDN LLKVSHRRYH
TGFYFGKSGE QVYESSSYIR DYDIVGVVRD YNEETKVATI EQRNRLFEGD TVEVLTPVGD
YYEIQMNDMK DEKDEKIDVA NKAQMIFKVK IDKPVKVNDM LIKCKEANS
|
|---|
| |