| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2020 |
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| Symbol | pilT |
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| ID | 4203420 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 2260188 |
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| End bp | 2261240 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 638082889 |
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| Product | twitching motility protein PilT |
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| Protein accession | YP_696453 |
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| Protein GI | 110798885 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.403517 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAAAGTT TAGCAGAACT TTTAGAGTTA ACAGTTAAAG AAGGAGCATC TGATTTGCAT
TTAACAGTAG GTATTTCTCC TATAATAAAA GTTAATGGAA AATTAGTAAG GTTAGAACAT
GAAATATTGC GCCCTGAAGA TACTGAAGCG TATGCTAAAG AGATATTACA GGATGCATAT
GAAAAATATG ATGCTATTGG AGAATACGAT ACATCATATT CAATACATGG TAAAGGTAGA
TTTAGAGTTA ATATATATAA ACAAAGAAAT AGTACAGCTT TAGCTATAAG AGTTATATCT
TTAGATATGC CAACTTTAGA TAGTTTAGGA TATCCTGAGA CTTTAAAGGA TATATGTAAT
CTTAAAAGAG GACTTGTATT AGTTACAGGA CCTACTGGAA GTGGTAAAAG TACAACTTTA
GCAGCTTTAA TCAATGAAAT AAATAGTAAT AGAGAATCTC ATATAATAAC AATAGAAGAT
CCTATAGAGT TTCTTCATAA ACATAATAAA TCTATTGTAA ACCAAAGAGA GATAGGAAAG
GATACTTTAA GTTATGAAAG AGCCTTAAAA GCAGCTCTTA GAGAGGATCC TGATGTTATT
TTAATTGGAG AAATGAGAGA TTTAGAGACT ATTTCAACAG CTATAACAGC GGCAGAGACT
GGACACTTAG TATTTTCAAC TCTTCATACT ATAGGAGCTG CTAAGACTAT AGATAGAATA
GTAGATGTTT TTCCACCACA TCAGCAGGAA CAAATAAAAA TACAGTTAGC TTCTGTTTTA
CAAATAATTA TATCACAACA ATTAGTGGAA ACCGTTGATG GAGATAGAAA TGCTGCATTA
GAAATAATGG TTGCTACACC AGCTATAAAA AATTTAATAA GAGAAGGAAA AACTCATCAA
ATAGAATCTT CTATCCAAAC TGGAAGTAAA TATGGAATGA GAACGATGGA CATGGAACTT
GCTAATCTGT ATAGAGAAGG TATAATAACA CAAGAAACGG CAATGAATTC TGCTATAGAT
AGGGAGATTT TAAGTCGATT ATTGATGTAT TAA
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| Protein sequence | MQSLAELLEL TVKEGASDLH LTVGISPIIK VNGKLVRLEH EILRPEDTEA YAKEILQDAY
EKYDAIGEYD TSYSIHGKGR FRVNIYKQRN STALAIRVIS LDMPTLDSLG YPETLKDICN
LKRGLVLVTG PTGSGKSTTL AALINEINSN RESHIITIED PIEFLHKHNK SIVNQREIGK
DTLSYERALK AALREDPDVI LIGEMRDLET ISTAITAAET GHLVFSTLHT IGAAKTIDRI
VDVFPPHQQE QIKIQLASVL QIIISQQLVE TVDGDRNAAL EIMVATPAIK NLIREGKTHQ
IESSIQTGSK YGMRTMDMEL ANLYREGIIT QETAMNSAID REILSRLLMY
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