Gene CPF_2012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_2012 
SymbolnrdR 
ID4201732 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand- 
Start bp2254009 
End bp2254458 
Gene Length450 bp 
Protein Length149 aa 
Translation table11 
GC content29% 
IMG OID638082881 
Producttranscriptional regulator NrdR 
Protein accessionYP_696445 
Protein GI110799685 
COG category[K] Transcription 
COG ID[COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 
TIGRFAM ID[TIGR00244] transcriptional regulator NrdR 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.37372 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGATGTC CTTACTGTTC TTATGAAGAA AGTAAAGTTG TGGATTCTAG ATCTGCAGAA 
GATTATAATG CAATTAGAAG AAGAAGAGAA TGTTTAAGAT GTTCTAAAAG ATACACAACT 
TACGAAAAGG TAGAAGATAT ACCAATACTT GTTATAAAAA AGGATTTAAG TAGAGAAAGT 
TTCAATAAAG AAAAAATCAT AAGCGGATTA ATTAAAGCGT GTCAAAAGAG ACCTGTATCT 
AGGGCTCAAA TAGAAGAAAT AGCAGCTGAT ATTGAACGAA ACATAAGTAA TAAAATGATG 
GTAGAAATAA AGTCTGATTA CATAGGTGAA ATGATAATGG AGAGACTTAA GGATATAGAC 
GAAGTTTCAT ACGTAAGATT TGCTTCTGTA TATAGACAAT TTAAAGATAT TAATACCTTT 
ATGGAAGAAA TAAAAAGTTT AATGAAATAA
 
Protein sequence
MRCPYCSYEE SKVVDSRSAE DYNAIRRRRE CLRCSKRYTT YEKVEDIPIL VIKKDLSRES 
FNKEKIISGL IKACQKRPVS RAQIEEIAAD IERNISNKMM VEIKSDYIGE MIMERLKDID 
EVSYVRFASV YRQFKDINTF MEEIKSLMK