| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2010 |
|---|
| Symbol | |
|---|
| ID | 4203230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 2251410 |
|---|
| End bp | 2253125 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 571 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 27% |
|---|
| IMG OID | 638082879 |
|---|
| Product | sensory box histidine kinase |
|---|
| Protein accession | YP_696443 |
|---|
| Protein GI | 110801347 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5002] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA GGATTATTAT TTTTACAACA CTAATAATAA CATTTTTTCT AGCAATAATG
ACTTCTATGT ACTTAGTAAT ATCAAATCAT AAATATTTAG AGGAATCAAA GAATGTTCTA
AATGAATATA ATAAGGTCAT AGCTTTATTG TTAGAAAATG ATAATGGAAA TATTAAGAGT
GAATTAGAAA GAATAGAATC AAATAATGAT ATGAAAAATA TAAGAATAAC ATATATCAGT
AAGGATGGAA ATGTTATTTT TGATACCCAT AAAAAATTAA TCAATGATAA TGAAAGTTAT
CTTAAGAGAC AAGAAATAAT AGAAGCCATA GAAAGTGGTT TAGGAAGCAG TGTAAGATAT
AGTAATGATC TTCATCAAAA CATGATCTAT AGTGCACTTA AACTTAAGGA TGGCTCTATT
GTTAGAACAT CAATAGCTGT TGAAAATGCA AAAATACTAG ATAGCATAAA TAGTAACTAT
TTATTAGTAG GGGTTATATT ATCCTTAGTC ATTGCCTTAC TTTTAACTGT TAAAATAACT
AATATAATAT TAAATCCACT AAAGGAATTA GAACAATTAA CCTCTACTAT TGCAAGTGGT
AATTTTCATA AAAGAGTAAA AATTAATTCT AAAGATGATG AAATTCAAAG ACTAGGAAAA
AGCTTTAATT ATATGGCAGA GCAATTAGAA ATAACCATGG AGAGATTTAA AGATAAACAA
AATGGATTAG AAGCCATATT AAAAAGTATG GGTAGTGGAG TAATAGCTTT TGACAGAGAT
ATGAATGTTT TAATGATAAA TCCTTATGCT AAAAAAATAT TTGGCATAAG CGGAGAGATT
ATTGGAAATA AACTTTTGGA TTATATAACT GATAAAGAGG TACTAAAGGC CTTTTTTGAT
GAAAAAGATA GGGTTGAAAT TGAAGTTAAC TATAATGATG ATCCAAAAAT ATTAAAAATA
AGAAAAGCAA GTATAATAAA TGAACCAGAA ATAATAGGGA CAGTTGTGGT TATACAAGAT
ATTACAGATA TTAAAAAGCT TGAAAACATG AGAAGTCAAT TCGTAGCTAA TATATCTCAT
GAACTTAAGA CCCCACTTAC ATCAATTAAA GGTTTTGCAG AAACCTTAAG ATATGTAGAT
GATGATGAAA CTAGAAATAA ATTTTTAAGC ATAATAGATG AAGAATCAGA TAGATTAGCA
AGACTTTTAG AGGATATATT ATGTCTTTAT GAAATAGAAC AAAAAAGAAG TACTGTTTTA
GAAGAATTTA ATGTTGATGA AGAAATTGAA AAAGTTTATA TGCTATTAAA TGATCAAGCT
AAGAAAAAAG GTGTGGAAAT ATTTTTAGAT ACAAATAGCA ATTGTGTTCT TATGGGAGAT
AAGGATAAGT TTAAACAAAT GTTACTTAAT CTTGTAAGCA ATTCTGTTAA ATATACTGAA
AAAGGTGGAA AGGTAAGAGT TGAAAGTTAT AATCGTGACA TGAATCTTGT TTTAGTTATT
GAGGATAATG GAATTGGAAT AAGTGCAGAG GATCTTCCAA GGATATTTGA AAGATTTTAT
AGAGTAGATA AAGCTAGAAG TAGAGAAAGT GGTGGAACTG GACTAGGTCT TGCCATAGTT
AAACATATAG TTAGACTTTT TGATGGTGAG ATAAATGTAA CTAGTGAACT AGGAGTAGGA
ACTAAAATAG TAATAACTAT ACCTATAAAT ATATAA
|
|---|
| Protein sequence | MKKRIIIFTT LIITFFLAIM TSMYLVISNH KYLEESKNVL NEYNKVIALL LENDNGNIKS
ELERIESNND MKNIRITYIS KDGNVIFDTH KKLINDNESY LKRQEIIEAI ESGLGSSVRY
SNDLHQNMIY SALKLKDGSI VRTSIAVENA KILDSINSNY LLVGVILSLV IALLLTVKIT
NIILNPLKEL EQLTSTIASG NFHKRVKINS KDDEIQRLGK SFNYMAEQLE ITMERFKDKQ
NGLEAILKSM GSGVIAFDRD MNVLMINPYA KKIFGISGEI IGNKLLDYIT DKEVLKAFFD
EKDRVEIEVN YNDDPKILKI RKASIINEPE IIGTVVVIQD ITDIKKLENM RSQFVANISH
ELKTPLTSIK GFAETLRYVD DDETRNKFLS IIDEESDRLA RLLEDILCLY EIEQKRSTVL
EEFNVDEEIE KVYMLLNDQA KKKGVEIFLD TNSNCVLMGD KDKFKQMLLN LVSNSVKYTE
KGGKVRVESY NRDMNLVLVI EDNGIGISAE DLPRIFERFY RVDKARSRES GGTGLGLAIV
KHIVRLFDGE INVTSELGVG TKIVITIPIN I
|
|---|
| |