Gene CPF_1989 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1989 
Symbolrpe 
ID4202411 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand- 
Start bp2227885 
End bp2228538 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content32% 
IMG OID638082858 
Productribulose-phosphate 3-epimerase 
Protein accessionYP_696422 
Protein GI110800106 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTTAAAA TAGCACCATC AATATTATCA GCAGATTTTA GTATTTTAGG AGAACAAGTT 
AAGAGAGTAG AAAAAGGTGG GGCAGAGTTC TTACATATAG ATGTAATGGA TGGTCATTTT 
GTTCCAAATA TAAGCTTTGG ATTTCCAATA ATGAAAGCTA TAAGGAACTT AAGCAATCTT 
GTTTTTGATG TTCACTTAAT GATAGAAGAG CCAGGAAGAT ATGTAGATGA ATTTATAAGT 
GCAGGAGCAG ATTTAATAAC TGTACATTAT GAAGCTGATA GACATATTGA TAGAACAATA 
AATTATATAA AAAGTAAAGG ATGCAAGGCT GGAATAGCTT TAAATCCAGG TACACCAGTT 
TCAATGCTTA AGAATTTAAT ACCTTCAGTA GATATGGTAT TAATAATGTC TGTTAATCCA 
GGGTTTGGGG GACAAAGCTT TATACCATAT AGTTTAAATA AGATAAAAGA AGTAAAAGAA 
ATGGCTAAGG CTTGTGGTAA GGAAGACTTA TTAATCCAAG TTGATGGAGG AGTAGGTGCA 
AATAATATAA AAGAGATAGT AGAAGCTGGA GCTAATGTTT TAGTTGCTGG ATCAGCTGTA 
TTTAAAGAAG ATAAAATAGA AGAAAACATT AAAGCTTTAA GAGAGGCACT ATAA
 
Protein sequence
MVKIAPSILS ADFSILGEQV KRVEKGGAEF LHIDVMDGHF VPNISFGFPI MKAIRNLSNL 
VFDVHLMIEE PGRYVDEFIS AGADLITVHY EADRHIDRTI NYIKSKGCKA GIALNPGTPV 
SMLKNLIPSV DMVLIMSVNP GFGGQSFIPY SLNKIKEVKE MAKACGKEDL LIQVDGGVGA 
NNIKEIVEAG ANVLVAGSAV FKEDKIEENI KALREAL