Gene CPF_1988 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1988 
Symbol 
ID4201733 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand- 
Start bp2227254 
End bp2227883 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content29% 
IMG OID638082857 
Productthiamine pyrophosphokinase 
Protein accessionYP_696421 
Protein GI110799686 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1564] Thiamine pyrophosphokinase 
TIGRFAM ID[TIGR01378] thiamine pyrophosphokinase 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTTC TTATAATAGC TGGGGGAGAA AAGCCTAGTA GTGAGTTATT AAAAAGTGAA 
ATTAAAGAGT GTGACTTATT AATAGCTGCT GATAGGGGAG CTGAAGCCTA TTTAGAAAAT 
GGATTTACTC CAGACTATGC CCTAGGAGAC TTTGATTCTA TAGGAGAAGA ATATAAGGAT 
ATATTAGATA AAATAAAAGT AGAAAAATTT AATCCTGAGA AGGATAATAC TGATACTGAG 
ATTGCTTTTT TTAAAGCCGT TGAATTAGGA GCTACAGAAA TTGTCTTCTT AGGGGTTACA 
GGAACAAGAT TAGATCATGT TATGGCTAAT TTAGGACTTT TAAGAGAAGC TTTAGAGAGA 
GGTATTGAGG CATATATTAT TGATAATAAT AATAAAATTT ACCTAAAGAA TAAAGGGACA 
ACTCTAAAAA AAGAATTTGG TGATTATATA TCATTTCAAG CTTTTGGTTC TCCAGTAAAT 
AATTTTTCTA TAAAAGGTTC TAAATATGAA CTTTATAATC ATAAACTTTT AATAGGAGAT 
TCATTATGTG TGTCTAATGA GTTTATTGAT GAATATATTG ATATATCCTT TGAAAAAGGT 
GAAGTTTTAG TTATATATTC AAGAGATTAA
 
Protein sequence
MKVLIIAGGE KPSSELLKSE IKECDLLIAA DRGAEAYLEN GFTPDYALGD FDSIGEEYKD 
ILDKIKVEKF NPEKDNTDTE IAFFKAVELG ATEIVFLGVT GTRLDHVMAN LGLLREALER 
GIEAYIIDNN NKIYLKNKGT TLKKEFGDYI SFQAFGSPVN NFSIKGSKYE LYNHKLLIGD 
SLCVSNEFID EYIDISFEKG EVLVIYSRD