Gene CPF_1970 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1970 
Symbolsmc 
ID4202121 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp2207909 
End bp2211466 
Gene Length3558 bp 
Protein Length1185 aa 
Translation table11 
GC content27% 
IMG OID638082839 
Productchromosome segregation protein SMC 
Protein accessionYP_696403 
Protein GI110800938 
COG category[D] Cell cycle control, cell division, chromosome partitioning 
COG ID[COG1196] Chromosome segregation ATPases 
TIGRFAM ID[TIGR02168] chromosome segregation protein SMC, common bacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.846909 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTTTAA AATCTCTTGA AATAAGGGGA TTTAAATCAT TTGCTGATAA AACAGAATTA 
AATTTTAAAA AAGGAATAAC AGCTATAGTT GGGCCTAATG GAAGTGGAAA AAGTAATGTA
TCAGATAGCG TAAGATGGGT TTTAGGGGAG CAAAGTGCTA AAACCTTAAG AGGAGCTAAG
ATGGAAGATG TAATCTTTAC TGGTACAGAA TATAGAAAGC CTATAGGATA TGCACAGGTT
TCTTTAACTT TAGACAATTC TTTAGGGGAA CTCCCTTTAG ATTATTTAGA TGTAAAAGTT
ACTAGAAAAT TATTCCGTTC TGGAGAAAGC GAATATTTAA TAAATAATTC TCCTTGTAGA
TTAAAAGATG TTGTAAACCT ATTTATGGAT ACAGGAATAG GAAAAGAAGG GTATTCGCTT
ATTGGTCAAG GTAAAATAGA TAGTATTCTA AGTGGTAAGC CGGAAGATAG AAGAGCTATT
CTAGAGGAAG CTGCAGGTAT TGTAAAGTTT AAATCTAGAA AAGGTGAAGC TGAGAAAAAG
TTAAAGAATA CGGAAGAAAA CTTAGTTAGA ATAAATGATA TAATTTTTAC TTATGAAGAA
AGATTAGGTC CTTTAGAAGA GGAAAAAAAT AAAGCTTTAA GATATTTAGA GCTTTCAAAT
GAATTAAAGC ACAAAGAAAT ATCATCTATT ATGAGTGAAT TACATAATAT TGATGGGGTT
ATATTAAAGC AAAAAGAAAA GATAAAAGAT TTAATAGCAT TTAATGATAA GCAAAAAGAA
AAGTATAAAG AAGAAAGAGA GAAAATGTTT GCTTTAAAGG AAGAGTTAGA CTCTTTAGAA
GGCAGCCATT CTAAAAAGCA AGAAGAGTAT TTTGTTAAAA AGGAAGAAAT AAATAAAAGC
TTAGGAAAAG TAAATCTTTT AAATGAAAGA ATTAAAAATA TAGATGAATT AATTCTTAAA
AACAAAGAAG AGTTAGAAGA AAATAAGAAG AAATTAAATG TCTTAATGAA GGAAAAAAAC
TCTATAGAGA AGGATTTTAA TTCAAATAAA AGTAAGTTTG AAAAAGAATT AGAAGAAATT
AATACCTTAG AAAAAGAAGT TAATGAACTT AACTTAAAAT TTATTTCTAA GGAAAAAGAA
ATTAAAAAGA TAAAGGATGA GGAATTAGAA CTTTTAAAAA AGGTTTCTTT ATCTAAAAAT
AAAATGACAA TGCTAGAAAG TGAATTGAGT AATATAAATG AAAAACTTGA TTCATCAAAA
AGCAAACAAG TAAATTATGA TAATTCATTA AAAATTAATT TAGCAACTAA TTTAAATCTT
CAAAAAGAGC TTCAAATTAT AGAAGAAGAA AAGAAAGATA AAGAAAGAGA ATTAAGGGAA
AAAGAAGAAG AGTTTAGAGA AGGCTTAAAG TTAATTAAGG AAACTCAAAG TAAACTTAAT
CAAATTTTAT CAAAGGTAAA TAAGGTTGAA GCTAATAAAG AAATGCTAAA AAAATTAGAA
AATCAATATG AAGGATACAA CCTTTCAGTA AAGAAAATAA TGGCTAGTGT AGATGCTGGA
CGTGTAAAAA TAAATAAAAA CAAATGCAAA GTTTTAGGAG AGGTTGTGGA AACTAAGGCT
GGATATGAAA CTGCCATTGA AGTAGCCTTA GGTGGAAGTA TTTCTAATAT TATAACTGAA
GATGAGGAAG TTGCAAAAAT TCTTATTAAT CATCTTAGAG AAAATAAGTT AGGAAGAGCT
ACATTCTTAC CATTATCAAT AATAAGGGGT AAGAAGTTAG AACTTAGCAA AAACATAGTT
GAAAGTGAAG GATTCTTAGG AATAGCTTCA GATTTAGTAA ACTTTAAAGA GGTTTATAAT
AATGTTATAA ATTATGTATT AGGTAAAACT ATAATATGTG ATAATATAGA TAATGCCATA
AAAATTGCTA AAATGCTCAA TTATAGACAT AAGATTGTTA CCTTATCTGG TGAGGTTGTA
AATGCAGGTG GAGCACTTAC AGGTGGTAGT CTTTATCAAA AAAACACAGG TATAATGTCT
AGAAAAAATG AAGTTAAAGC TTTAGAGGAT GAATTAGTTA GGGTAAAAAA TGAAGAGCAC
ATACTAACTA AAGAATTGGA AAAGTTAAAT AGAGATCAAG AAGAGTTAAG CATAAAAAAA
CAAGAAATTA TAGACAAAAT ATATGAAAAG AATTTAGAGT TAGCAGACTT AAATAACAAG
ATTAAAAATG TTAATGATGA AACTTTTAAA ATAAAAAATT CTATAAAATC TTTAGAGTTA
GAGCTTAAGG ATATTGATTC AAGAAAGATT AAGATAGTTA AAGAAATTGA AATTGTTAAT
GAAAAGATTA GTCAATTTGA AAACAAAGAA GTAACTAATT CAGAAAAGGT AAAAGAATTA
GATAAGAAAC GTGAAGAACT TTCAAAAACT CTTTCTAAAT ATAAAGATAA GCTAACTAAT
ATGAAAATAA ATAAAGCTAA GCTTCAAGAA GTTATTGAGG GAAGAGAAAA GGAAGCTAAT
AGAATAAATT CTTCTATAGA AGAAGTGGAA AATAAACTTA TAAATATTAC TAAGTACTTA
GAAGAGATAA AAGCTAATAA GGAAGAAAGT AAAAAAGAAA TAGTTTTATG TGAAAAGTTC
ATAAAAGAAG AGGAAGTAAA TATAATTACT CTTGAAGAGA ACTTTAAATC CTTTGAACTT
AAAAAAGGTA AGTTAAAAGA GACCATAAGC TCTGCTGAGA ATATCTTAGA AGTTCTTTCA
GTTGAAATAG CTAAAAAGGA AGAAGAAGTT CATAAAAATG ATATAACTTA TACAAAACAA
GAAAATGAAA AAAATATCTT AAACAAAAGA CTTCTAGAAG AATTTAATAC AAGTTTTGAA
GAAGAGAAAA ATAGATTTAA GCCTATTGAA GATATGAATT CTCATAAGTC AAGAATATCA
ACTCTTAAAG CTAGAATAAC TGGTTTAGGA AATGTAAATG TAAATGCTAT TGAAGAATTT
AAAGAAATAT CTGAGAAGTA TAATTTTATG ACAACAGAAA GAGATGATTT AGAAAAGGCT
AAGGAAGAAC TTTTAAATGT TATAGAAGAA ATGACATCTA AGATGAGAGT AGTCTTTAGA
CAAAATTTTA ATATCTTAAA TAAGCTATTT GATGAAACCT TTAAAGAATT ATTTAAAGGC
GGTAGTGCAA AACTTGTTTT AGGTGAGGGT GACGAACTTA CAGGAAATAT AGATATAAAT
GTTCAACCAC CAGGAAAGAA GCTTCAAAAT ATTAATCTTA TGTCTGGAGG AGAGAAGGTT
TTATCTGCTA TAGCCTTATT ATTCTCCATA TTAAAGATGA AACCTACACC ATTCTGTATA
TTAGATGAAA TTGAGGCTGC TTTAGATGAT GCCAATGTAA GAAGATATGC AGAGTTTTTA
AGTAAGTTTA GAGATAATAC TCAGTTTATA GTAATAACGC ATAGAAAAGG TACTATGGAA
GCTGCTGATG TTATGTATGG AGTTACTATG GAAGAGAAAG GTATATCTAA AATTGTTTCA
GTAGACTTGG AGAAATAG
 
Protein sequence
MFLKSLEIRG FKSFADKTEL NFKKGITAIV GPNGSGKSNV SDSVRWVLGE QSAKTLRGAK 
MEDVIFTGTE YRKPIGYAQV SLTLDNSLGE LPLDYLDVKV TRKLFRSGES EYLINNSPCR
LKDVVNLFMD TGIGKEGYSL IGQGKIDSIL SGKPEDRRAI LEEAAGIVKF KSRKGEAEKK
LKNTEENLVR INDIIFTYEE RLGPLEEEKN KALRYLELSN ELKHKEISSI MSELHNIDGV
ILKQKEKIKD LIAFNDKQKE KYKEEREKMF ALKEELDSLE GSHSKKQEEY FVKKEEINKS
LGKVNLLNER IKNIDELILK NKEELEENKK KLNVLMKEKN SIEKDFNSNK SKFEKELEEI
NTLEKEVNEL NLKFISKEKE IKKIKDEELE LLKKVSLSKN KMTMLESELS NINEKLDSSK
SKQVNYDNSL KINLATNLNL QKELQIIEEE KKDKERELRE KEEEFREGLK LIKETQSKLN
QILSKVNKVE ANKEMLKKLE NQYEGYNLSV KKIMASVDAG RVKINKNKCK VLGEVVETKA
GYETAIEVAL GGSISNIITE DEEVAKILIN HLRENKLGRA TFLPLSIIRG KKLELSKNIV
ESEGFLGIAS DLVNFKEVYN NVINYVLGKT IICDNIDNAI KIAKMLNYRH KIVTLSGEVV
NAGGALTGGS LYQKNTGIMS RKNEVKALED ELVRVKNEEH ILTKELEKLN RDQEELSIKK
QEIIDKIYEK NLELADLNNK IKNVNDETFK IKNSIKSLEL ELKDIDSRKI KIVKEIEIVN
EKISQFENKE VTNSEKVKEL DKKREELSKT LSKYKDKLTN MKINKAKLQE VIEGREKEAN
RINSSIEEVE NKLINITKYL EEIKANKEES KKEIVLCEKF IKEEEVNIIT LEENFKSFEL
KKGKLKETIS SAENILEVLS VEIAKKEEEV HKNDITYTKQ ENEKNILNKR LLEEFNTSFE
EEKNRFKPIE DMNSHKSRIS TLKARITGLG NVNVNAIEEF KEISEKYNFM TTERDDLEKA
KEELLNVIEE MTSKMRVVFR QNFNILNKLF DETFKELFKG GSAKLVLGEG DELTGNIDIN
VQPPGKKLQN INLMSGGEKV LSAIALLFSI LKMKPTPFCI LDEIEAALDD ANVRRYAEFL
SKFRDNTQFI VITHRKGTME AADVMYGVTM EEKGISKIVS VDLEK