Gene CPF_1964 details

Gene Information

• Locus tag: CPF_1964
• Symbol: rimM
• ID: 4203576
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: -
• Start bp: 2203995
• End bp: 2204492
• Gene Length: 498 bp
• Protein Length: 165 aa
• Translation table: 11
• GC content: 29%
• IMG OID: 638082833
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_696397
• Protein GI: 110800602
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAGATT TATTAGTAGT TGGTCAAATA ATAAACACTC ATGGTTTAAG AGGTGAAATG 
AAAGTTATGC CTTTAACTGA AGATATGAGA AGATTTGACT ATTTAGAATA TGTTATCTTA 
AAAGGGAAAA AGGTTAAAGT AGAGGGCGTA AAATACTTTA AGGATAAAGT TATACTTAAA 
TTAGAAGGAA TAAATTCAAT AGAGGAAGCT GAAAAACTAA AAAGAACTTA TTTAGAAATA 
GAACGTGAAG ATGCTATAGA GCTTGAAGAA GATGAATATT TCATAGTTGA TTTAGTTGGA 
TGCACTGTTG TTGATACAGA GGGATTTGAG TATGGAAAAA TCAAAGATGT AATCCAAACT 
CCAAGTAATG ATGTTTATTG GGTTCAAGGA AAGAAGGAAG TATTAGTTCC AGTATTAAAA 
GATATAGTTT TAGATATTAA TATGGATGAA AAATTAATTA CTATAAGACC TTCTGGAGAG 
TGGCAATATG AAGATTAA 

 

Protein sequence

MEDLLVVGQI INTHGLRGEM KVMPLTEDMR RFDYLEYVIL KGKKVKVEGV KYFKDKVILK 
LEGINSIEEA EKLKRTYLEI EREDAIELEE DEYFIVDLVG CTVVDTEGFE YGKIKDVIQT 
PSNDVYWVQG KKEVLVPVLK DIVLDINMDE KLITIRPSGE WQYED