Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1956 |
Symbol | topA |
ID | 4202010 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 2195749 |
End bp | 2197851 |
Gene Length | 2103 bp |
Protein Length | 700 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 638082825 |
Product | DNA topoisomerase I |
Protein accession | YP_696389 |
Protein GI | 110800343 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA [COG0551] Zn-finger domain associated with topoisomerase type I |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial [TIGR01057] DNA topoisomerase I, archaeal |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTCAAA AATTAGTAAT TGTTGAGTCA CCAGCTAAAG CCAAGACAAT AGAAAAATAT TTAGGTAAAA ATTATGTAGT CGAAGCTTCC ATGGGACATG TAAGAGATTT GCCAAAAAGC CAATTAGGCG TTGATATAGA AAATGAATAT AATCCTAAAT ATATAACAAT AAGAGGAAAA GGTGAACTTT TAAGCAAACT TAGAAAGTTA GCTAAAAAAA GTGATAAGAT ATACCTTGCA ACTGACCCTG ATAGAGAAGG GGAAGCTATA TCTTGGCACT TAGCTAATGT GCTTAAGATA GATGAAAACG AGAATTGTAG AATAGAATTT AATGAAATAA CAAAGGATGC AGTTAAAAAT TCAATAAAGC ATCCAAGAAA AATAAATTGT AATTTAGTAG ATGCTCAGCA AGCAAGAAGA GTGTTAGACA GATTGGTTGG ATATGAAATA AGTCCACTTC TATGGAGAAA TGTAAAATGG GGATTGAGTG CTGGAAGGGT TCAGTCAGCA GCATTAAAAC TTATATGTGA TAGAGAAGAA GAAATAAAGA AGTTCAATCC AGAAGAGTAT TGGACTGTTG ATGTTAAACT TAAAAAAGGA AAGAAGTCTT TCCCTGTTAA GTTAACAACT AAAAATAAGA AAAAGATAGA AATAAAAAAT AAAGAACAAG CAGATCAAAT AATAGATGAA CTTAAAGAAA ATGAATATAT AGTAAGCAAG ATAAAAAAAG GAACTAAGAA TAAAAATCCT TTAGCTCCAT TTACTACAAG TACTCTTCAA CAAGAGGCAA GTAAAAAGCT TAACTTTATG ACAAAGAAAA CAATGTCAGT AGCTCAACAA CTTTATGAAG GGGTTGAAGT TAAGAAATTT GGAACTGTAG GTTTAATAAC TTATATGAGA ACTGATTCTG TTAGAATCTC AAAGGAAGCT CAAGAAAAAG CTCTTAACTT TATAGATGAA ACATATGGAA AAGAGTATGT TCCAGAGGAA CCAAGAGTAT ATAAAGGAAA GAAAAATATA CAAGATGCCC ATGAAGCCAT AAGACCTACA TATGTTGAAA TAACACCAGA GATTGCTAAG GCAAACTTAA GTAATGATCA ATATAAGTTA TATGCTTTAA TATGGAAAAG ATTCATAGCA AGCCAAATGG CTACATGTAT ATTAAATACT AATAGCCTAG AAATTAAAAA TGGAGATTAT ACATTAAGAG CTAGTGGATC CACTATAAAA TTTGATGGTT TCATGAAAGT TTATGAGTAT ATATTAGGGG AAGAGGAAGA ATCAGTACTT TTACCTGAAT TAGAAGAAAA TGAAGTTTTA AAAGAAGAAT CAATTGAAGG TAAACAACAT TTTACTCAAC CACCTGCTAG GTATTCAGAG GCTGCTTTTG TTAAGCTTTT AGAGGAAAAA GGTATTGGAA GACCAAGTAC TTACGTTCCA ACAATATCTA CATTAATAAG TAGAAAATAT GTAGATAGAG AGAAAAAGAT TCTTATACCA ACAGAATTAG GCTTTATAGT AAATGATATA CTTTCTAATT ATTTTAAGCA GATAGTTGAT ACTGACTTTA CTGCAGAAAT GGAAGTTAAA CTTGATAATG TTGAAGCTGG AAAAGAAAGT TGGACTCATA TAGTAGATGA ATTCTTTACT CCATTAAAGG AAGATATAGA AAAGGCAGAA AAAGAGATAT CTAAGGTTAT TATAGAAGAT AAAGTCAGTG ATGTACCTTG TGATAAATGT GGAAGACTTA TGGTTATTAA GCATGGAAGA TTTGGAGATT TCTTAGCTTG CCCTGGATAT CCAGAGTGTC AAAATACAAA ACCTATAGTT GAAGAGGTTG ATGCAAACTG TCCATTATGT GGAGGAAAGA TTTTAGTTAA GAGAAGTAAA AAGGGAAACA GATTCTATGG ATGTAGTAAT TATCCAGAGT GTAATTTCGT AAGTTGGTAT GAACCAACAA ATGAAAAATG CCCAGAATGT GGTTCATATA TGGTTAAGAG ATACTCTAAG AGTAAAGGTG AATATTTACA GTGTAGCGAT AAAGAATGTA AATATGAAAA AATAATTGAA AAAAATAATG ATGAAAATAA CTCAGAAAAG TAG
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Protein sequence | MGQKLVIVES PAKAKTIEKY LGKNYVVEAS MGHVRDLPKS QLGVDIENEY NPKYITIRGK GELLSKLRKL AKKSDKIYLA TDPDREGEAI SWHLANVLKI DENENCRIEF NEITKDAVKN SIKHPRKINC NLVDAQQARR VLDRLVGYEI SPLLWRNVKW GLSAGRVQSA ALKLICDREE EIKKFNPEEY WTVDVKLKKG KKSFPVKLTT KNKKKIEIKN KEQADQIIDE LKENEYIVSK IKKGTKNKNP LAPFTTSTLQ QEASKKLNFM TKKTMSVAQQ LYEGVEVKKF GTVGLITYMR TDSVRISKEA QEKALNFIDE TYGKEYVPEE PRVYKGKKNI QDAHEAIRPT YVEITPEIAK ANLSNDQYKL YALIWKRFIA SQMATCILNT NSLEIKNGDY TLRASGSTIK FDGFMKVYEY ILGEEEESVL LPELEENEVL KEESIEGKQH FTQPPARYSE AAFVKLLEEK GIGRPSTYVP TISTLISRKY VDREKKILIP TELGFIVNDI LSNYFKQIVD TDFTAEMEVK LDNVEAGKES WTHIVDEFFT PLKEDIEKAE KEISKVIIED KVSDVPCDKC GRLMVIKHGR FGDFLACPGY PECQNTKPIV EEVDANCPLC GGKILVKRSK KGNRFYGCSN YPECNFVSWY EPTNEKCPEC GSYMVKRYSK SKGEYLQCSD KECKYEKIIE KNNDENNSEK
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