Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1950 |
Symbol | uppS |
ID | 4203254 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 2190553 |
End bp | 2191314 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 30% |
IMG OID | 638082819 |
Product | undecaprenyl pyrophosphate synthase |
Protein accession | YP_696383 |
Protein GI | 110801370 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0020] Undecaprenyl pyrophosphate synthase |
TIGRFAM ID | [TIGR00055] undecaprenyl diphosphate synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTAGATT TTTTTAGTAA AAAAGGAAAT GAAGATTCAG AAGAAATAGT TCTAATTGAA GATAAAATGC CAAAGCATAT TGCCATAATA ATGGATGGTA ATGGAAGATG GGCAAAAAAA AGAGGTCTTC CAAGAACTAT GGGACATAGA GCTGGGGTTA AGACTATAAA AACTATTGTA AAAGAATGCG ATAAATTAGG AGTGAAATAT TTAACTTTAT ATGCTTTCTC TACTGAAAAC TGGAAAAGAC CAGAAGATGA AGTTAATGCT CTTATGAAGT TAGTTGTTGA ATTTATAAAA AATGAAATTG ATGAACTTCA TCAAAACGGA GTAAGGGTAC AAACTATAGG TGATTTATCA AGATTCCCAG AAGAACCTAA AAAAGCTATA CTTTGGGCTA TGGAAAAAAC TAAAGATAAC ACTGGAGTAG TTTTAAGCTT AGCATTAAAT TATGGTGGAA GAAATGAAAT AGTTAGAGGT ATAAAATCTG TAATAGAAGA TGTTAAAGCG GGCAAAATAA GTATAGATGA TATAAACGAA GATATGTTTA ATGACTATCT TTATACTAAA GGAATGCCAG ATCCAGATCT TATAATAAGA CCAAGTGGAG AACAAAGACT TAGCAACTTC TTATTATGGC AATGTGCATA CTCAGAATTT TGGTATTCTC AAATAAACTG GCCAGATTTT AATGGTGAAG ATTTAAGAAA AGCTATTTTT GATTATCAAA ATAGAGATAG AAGATTTGGT GGAATTAAAT AA
|
Protein sequence | MLDFFSKKGN EDSEEIVLIE DKMPKHIAII MDGNGRWAKK RGLPRTMGHR AGVKTIKTIV KECDKLGVKY LTLYAFSTEN WKRPEDEVNA LMKLVVEFIK NEIDELHQNG VRVQTIGDLS RFPEEPKKAI LWAMEKTKDN TGVVLSLALN YGGRNEIVRG IKSVIEDVKA GKISIDDINE DMFNDYLYTK GMPDPDLIIR PSGEQRLSNF LLWQCAYSEF WYSQINWPDF NGEDLRKAIF DYQNRDRRFG GIK
|
| |