Gene CPF_1934 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1934 
SymbolpnpA 
ID4202582 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp2171507 
End bp2173615 
Gene Length2109 bp 
Protein Length702 aa 
Translation table11 
GC content34% 
IMG OID638082803 
Productpolynucleotide phosphorylase/polyadenylase 
Protein accessionYP_696367 
Protein GI110799658 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) 
TIGRFAM ID[TIGR03591] polyribonucleotide nucleotidyltransferase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCATA CCCATGAAAC TATCATAGCA GGAAGACCGA TGAAAGTTGA GTTCGGGAAA 
TTAGGAATGC TTTCAGATGC TGCTATATTA ATGAGTTATG GTGATACAGT AATATTAACA
AATGTAAATG CATCAGAAAA ACCAAGAGAG GGAATAGACT TTTTCCCACT AAGTGTTGAA
TACGAAGAGA GATTATATTC AGTTGGTAAA ATACCAGGTG GATTTATAAA AAGAGAAGGA
AAACCTTCAG AGAAAGCTAT ACTAAATGGT AGAGCTATAG ACAGACCTTT AAGACCTTTA
TTCCCAAAAG GATATAGAAA TGATGTTCAA GTAGTATGTA CAGTTGTTTC AGTAGAAAAT
GATAACCTTC CTGAAATACT AGCTATAAAT GCTGCCTCAA TGGCATTATG TTTATCAAGC
ATACCTTTTA CTACTCCAGT GGCTGCAGTT CAAGTAGGAT TAATAGGAGA AGAATTCATA
CTAAACCCTA CTTCAAAGGA AAGAGAAGAA AGTTCACTTC AATTAACTGT TTGCGCAACT
AAGGAAAGAG TTATGATGAT TGAAGCTGGT GGAGATGAAA TCCCAGAAGA TACAATGATT
AATGCTATCA AATTTGGTTT TGATAAGTGT CAAGATATAA TAAAATTCCA AGAAGAAGCT
GTAAGTATGT TCGGTAAAGA GAAAAAAGTG CCAGAACTAC ATAAAGTACC AGAAGAAATA
GAAGAAGCTG TAAGAGAATT TGCTTTTGAT ATGATTAGTG AGTCAATGCA CATTACTGAT
AGAGATGAAA GAAATGCTGC AATGGACGAA GTTAAAGCTA AAATAAATGA AGAGTTCGAA
GAAAAATATC CAGATAACAT GTCTGATATT GGAGAAGCAG TTTATGATAT GCAAAAAGAA
GTCGTAAGAC ATATGCTTTT AAAAGAAGGA AAAAGACCTG ATGGAAGAGC TTTTGATGAG
GTAAGAAACA TTGGTTGTGA AGTTGGATTA CTTCCAAGAA CTCATGGAAC AGGATTATTT
ACAAGAGGAC TTACTCAAGT AATGACTGTT GCAACTTTAG GATCAATAAG TGAAATTCAA
ATATTAGATG GTATTGGTGA AGAAGAATCT AAGAGATATA TGCATCACTA TAACTTCCCA
GCATACAGTG TAGGAGAAGT TAGACCATTA AGAGGACCAG GTAGAAGAGA AATTGGTCAT
GGAGCTTTAG CTGAAAGAGC TTTAGAACCA CTTATACCTT CAGAAGCTAA GTTCCCATAC
ACAATAAGAT TAGTATCAGA AGTATTAAGC TCAAATGGAT CTACTTCACA GGCTTCAGTT
TGTGGTAGTA CATTAGCACT TTTAGATGCT GGGGTTCCAA TAAAGAGACC AGCAGCAGGT
ATAGCTATGG GATTAATAAC TTCAAAAGAT TTAACTGAGG AAGAAGTTTT AACTGATATC
CAAGGTTTAG AAGATTTCTT TGGAGATATG GACTTTAAAG TAGCTGGAAC AGAAGAGGGA
ATAACTTCAA TCCAAGTAGA TACTAAAATA AAAGGTCTAT CAGAAAAAGT TATACACGAT
GCTATATATG GAGCAAGAAA AGCAAGATTA ATGATCTTAG ATAAGATTAA AGAATGCATA
CCAGCTCCAA GAGAAGAAGT TTCAAAATAT GCACCTAAAA CATCAACTCT ACAAATAGAT
CCTGAGAAAA TCAGAGATGT AATTGGGGCT GGTGGAAAAG TTATAAACAA GATTATAGCT
GACACTGGTG TTAAAATAGA TATAAAAGAA GATGGATTAG TTTATGTTTC ATCAGCTGAA
TCAGAAGGTG TTAAAGAAGC TGTTAAAATA ATAGAAGGTT TAACTAAAGA GGTTAAAGCT
GGAGAAATTT ATTTAGGTAA AGTTACAAAA ATTGCTCAAT TTGGTGCCTT TGTTGAGGTA
TTACCTAATA AAGAAGGATT AGTTCATATT TCTAAGTTAG ATAATAAGAG AGTAGAAAAA
GTTGAGGATG TAGTATCTGT TGGAGATGAA ATCTTAGTTA AGGTAACAGA AATAGATTCT
CAAGGTAGAA TAAATCTTTC AAGAAAAGAT GCAATAAAAG AAGCTGAAGA AGAAAATAAA
CAGCAATAG
 
Protein sequence
MNHTHETIIA GRPMKVEFGK LGMLSDAAIL MSYGDTVILT NVNASEKPRE GIDFFPLSVE 
YEERLYSVGK IPGGFIKREG KPSEKAILNG RAIDRPLRPL FPKGYRNDVQ VVCTVVSVEN
DNLPEILAIN AASMALCLSS IPFTTPVAAV QVGLIGEEFI LNPTSKEREE SSLQLTVCAT
KERVMMIEAG GDEIPEDTMI NAIKFGFDKC QDIIKFQEEA VSMFGKEKKV PELHKVPEEI
EEAVREFAFD MISESMHITD RDERNAAMDE VKAKINEEFE EKYPDNMSDI GEAVYDMQKE
VVRHMLLKEG KRPDGRAFDE VRNIGCEVGL LPRTHGTGLF TRGLTQVMTV ATLGSISEIQ
ILDGIGEEES KRYMHHYNFP AYSVGEVRPL RGPGRREIGH GALAERALEP LIPSEAKFPY
TIRLVSEVLS SNGSTSQASV CGSTLALLDA GVPIKRPAAG IAMGLITSKD LTEEEVLTDI
QGLEDFFGDM DFKVAGTEEG ITSIQVDTKI KGLSEKVIHD AIYGARKARL MILDKIKECI
PAPREEVSKY APKTSTLQID PEKIRDVIGA GGKVINKIIA DTGVKIDIKE DGLVYVSSAE
SEGVKEAVKI IEGLTKEVKA GEIYLGKVTK IAQFGAFVEV LPNKEGLVHI SKLDNKRVEK
VEDVVSVGDE ILVKVTEIDS QGRINLSRKD AIKEAEEENK QQ