Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1934 |
Symbol | pnpA |
ID | 4202582 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 2171507 |
End bp | 2173615 |
Gene Length | 2109 bp |
Protein Length | 702 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 638082803 |
Product | polynucleotide phosphorylase/polyadenylase |
Protein accession | YP_696367 |
Protein GI | 110799658 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCATA CCCATGAAAC TATCATAGCA GGAAGACCGA TGAAAGTTGA GTTCGGGAAA TTAGGAATGC TTTCAGATGC TGCTATATTA ATGAGTTATG GTGATACAGT AATATTAACA AATGTAAATG CATCAGAAAA ACCAAGAGAG GGAATAGACT TTTTCCCACT AAGTGTTGAA TACGAAGAGA GATTATATTC AGTTGGTAAA ATACCAGGTG GATTTATAAA AAGAGAAGGA AAACCTTCAG AGAAAGCTAT ACTAAATGGT AGAGCTATAG ACAGACCTTT AAGACCTTTA TTCCCAAAAG GATATAGAAA TGATGTTCAA GTAGTATGTA CAGTTGTTTC AGTAGAAAAT GATAACCTTC CTGAAATACT AGCTATAAAT GCTGCCTCAA TGGCATTATG TTTATCAAGC ATACCTTTTA CTACTCCAGT GGCTGCAGTT CAAGTAGGAT TAATAGGAGA AGAATTCATA CTAAACCCTA CTTCAAAGGA AAGAGAAGAA AGTTCACTTC AATTAACTGT TTGCGCAACT AAGGAAAGAG TTATGATGAT TGAAGCTGGT GGAGATGAAA TCCCAGAAGA TACAATGATT AATGCTATCA AATTTGGTTT TGATAAGTGT CAAGATATAA TAAAATTCCA AGAAGAAGCT GTAAGTATGT TCGGTAAAGA GAAAAAAGTG CCAGAACTAC ATAAAGTACC AGAAGAAATA GAAGAAGCTG TAAGAGAATT TGCTTTTGAT ATGATTAGTG AGTCAATGCA CATTACTGAT AGAGATGAAA GAAATGCTGC AATGGACGAA GTTAAAGCTA AAATAAATGA AGAGTTCGAA GAAAAATATC CAGATAACAT GTCTGATATT GGAGAAGCAG TTTATGATAT GCAAAAAGAA GTCGTAAGAC ATATGCTTTT AAAAGAAGGA AAAAGACCTG ATGGAAGAGC TTTTGATGAG GTAAGAAACA TTGGTTGTGA AGTTGGATTA CTTCCAAGAA CTCATGGAAC AGGATTATTT ACAAGAGGAC TTACTCAAGT AATGACTGTT GCAACTTTAG GATCAATAAG TGAAATTCAA ATATTAGATG GTATTGGTGA AGAAGAATCT AAGAGATATA TGCATCACTA TAACTTCCCA GCATACAGTG TAGGAGAAGT TAGACCATTA AGAGGACCAG GTAGAAGAGA AATTGGTCAT GGAGCTTTAG CTGAAAGAGC TTTAGAACCA CTTATACCTT CAGAAGCTAA GTTCCCATAC ACAATAAGAT TAGTATCAGA AGTATTAAGC TCAAATGGAT CTACTTCACA GGCTTCAGTT TGTGGTAGTA CATTAGCACT TTTAGATGCT GGGGTTCCAA TAAAGAGACC AGCAGCAGGT ATAGCTATGG GATTAATAAC TTCAAAAGAT TTAACTGAGG AAGAAGTTTT AACTGATATC CAAGGTTTAG AAGATTTCTT TGGAGATATG GACTTTAAAG TAGCTGGAAC AGAAGAGGGA ATAACTTCAA TCCAAGTAGA TACTAAAATA AAAGGTCTAT CAGAAAAAGT TATACACGAT GCTATATATG GAGCAAGAAA AGCAAGATTA ATGATCTTAG ATAAGATTAA AGAATGCATA CCAGCTCCAA GAGAAGAAGT TTCAAAATAT GCACCTAAAA CATCAACTCT ACAAATAGAT CCTGAGAAAA TCAGAGATGT AATTGGGGCT GGTGGAAAAG TTATAAACAA GATTATAGCT GACACTGGTG TTAAAATAGA TATAAAAGAA GATGGATTAG TTTATGTTTC ATCAGCTGAA TCAGAAGGTG TTAAAGAAGC TGTTAAAATA ATAGAAGGTT TAACTAAAGA GGTTAAAGCT GGAGAAATTT ATTTAGGTAA AGTTACAAAA ATTGCTCAAT TTGGTGCCTT TGTTGAGGTA TTACCTAATA AAGAAGGATT AGTTCATATT TCTAAGTTAG ATAATAAGAG AGTAGAAAAA GTTGAGGATG TAGTATCTGT TGGAGATGAA ATCTTAGTTA AGGTAACAGA AATAGATTCT CAAGGTAGAA TAAATCTTTC AAGAAAAGAT GCAATAAAAG AAGCTGAAGA AGAAAATAAA CAGCAATAG
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Protein sequence | MNHTHETIIA GRPMKVEFGK LGMLSDAAIL MSYGDTVILT NVNASEKPRE GIDFFPLSVE YEERLYSVGK IPGGFIKREG KPSEKAILNG RAIDRPLRPL FPKGYRNDVQ VVCTVVSVEN DNLPEILAIN AASMALCLSS IPFTTPVAAV QVGLIGEEFI LNPTSKEREE SSLQLTVCAT KERVMMIEAG GDEIPEDTMI NAIKFGFDKC QDIIKFQEEA VSMFGKEKKV PELHKVPEEI EEAVREFAFD MISESMHITD RDERNAAMDE VKAKINEEFE EKYPDNMSDI GEAVYDMQKE VVRHMLLKEG KRPDGRAFDE VRNIGCEVGL LPRTHGTGLF TRGLTQVMTV ATLGSISEIQ ILDGIGEEES KRYMHHYNFP AYSVGEVRPL RGPGRREIGH GALAERALEP LIPSEAKFPY TIRLVSEVLS SNGSTSQASV CGSTLALLDA GVPIKRPAAG IAMGLITSKD LTEEEVLTDI QGLEDFFGDM DFKVAGTEEG ITSIQVDTKI KGLSEKVIHD AIYGARKARL MILDKIKECI PAPREEVSKY APKTSTLQID PEKIRDVIGA GGKVINKIIA DTGVKIDIKE DGLVYVSSAE SEGVKEAVKI IEGLTKEVKA GEIYLGKVTK IAQFGAFVEV LPNKEGLVHI SKLDNKRVEK VEDVVSVGDE ILVKVTEIDS QGRINLSRKD AIKEAEEENK QQ
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