| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1900 |
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| Symbol | spoVB |
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| ID | 4200971 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | + |
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| Start bp | 2136345 |
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| End bp | 2137874 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 27% |
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| IMG OID | 638082769 |
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| Product | stage V sporulation protein B |
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| Protein accession | YP_696333 |
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| Protein GI | 110799140 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR02900] stage V sporulation protein B |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000710979 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGTAAAA ATGATTTCTA TAAAAACTCT TTCATGCTAA CAGCCTCTAA CTTAACAACT
GGATTATTAG GTTTTATCTT TTCTATGTAC CTATCAAAGG TACTAGGCCC TGAAGGAATG
GGACTTTATG GTATTATAAT GCCTATTTAT AATTTATTTA TATCAATTAT GACAGCTGGT
ATAATTGCAT CCATTTCTAA GATAACTGCT GTATATTCAG CAAGAGATGA TTATAAAAAC
ATAATTCGAA CAATGAAAGT TGTGGCTATT TTTAATTTTA TTTGGTGTCT TATAATAGGA
ATATTTGTAT TTTTCTTATC ACCTATAATC GGACATTTTT GGGCTAAGGA TCCTAGAATA
ATAAAATCTA TAATGGTAAC TTGTCCTGCT ATGATATTTA TAGCACTTTC AAACATATTA
AAGGGATTTT TCTATGGAAC TTCAAAAATC ACTGTTCCTT CTTTTATAGA TATTTTAGAA
AAATCTTTAC GTATCTTTGT TTTAGCTATA TTAATTTTTA TATTTAAAGC TGAAACTTTA
GAGTCTTTAG TTACTTTAGC TTACTTAGCC TTATGTCTTG GGGAACTACA AAGTTTAATA
CTTTTATTTG GATATTTTAA ATACTCAATG AGTAAATTTC CAAAAACAAA TGCAAAAGGG
GAAAGCCGTG CTCAATTATT ATTTGATGTT TTAGTAACCT CAGTACCTTT ATGCTTAAAT
GGATTTTTAA TGAGTATTTT TAGCGTTATC TCAACACTTT TAGTTCCTAA ACGGCTTATA
GTTGCAGGAT TTACTTATTC CCAAGCACTT TCTCTTATAG GAAAATATTC TTCCATGGCA
ATGTCCATAG TAACTTTTCC TATAATTATA GTTTCTTCAA TAAACACTAT GCTAATACCT
GATTTATCTC AAACTTTAAG TAAAGGGAAT TATCTTTCAG CTACTAAAAG AATTAGAGAT
GTTATTAAAA TAGCTTTTTT AATAGGTATT TGTACCACAG TAATTGGACT ATGTGTTCCT
GACTCTTTAG GTAAATTATT CTTTGGAAGA GATGATTTAG GAGAATATAT AAGAATAACA
TCAGTAATGA TGCCAATAGT ATTTACTTCA AATACTATGT ATGGAATTTT AAATGGACTT
GGAAGACAAA ATGTAATTTT AAGAAATACT ATAATAACAG AAGTTTTAGA AGTTACATTG
TTATTTTTCT TAACTGCAAT ACCATCTATA AATATTTATG GTTATGCAAT AACTATGCTT
ATAATTTCAT CACTTTCCCT TTGTTTAAAC CTTTATGAAA TATATAAAAA TATAAATATA
GGTTTATCCT TATCAAACTT CTTAATATAT ATATTAACAG GAGTTTTAAC CTATATATGC
TTAAGTCCAC TTTCACTAAA GCTTTCTTTT ATTGATTTTA GGATTCAAGT TTTAGCTGTA
ACTTCTATAG CAGCTTCTAT ATTCATATTT TTAATAATAA AGGAGAAATT CTCATCAAGG
TTTAGAAAAA TCTCTTTAAA AAGCAGATAG
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| Protein sequence | MSKNDFYKNS FMLTASNLTT GLLGFIFSMY LSKVLGPEGM GLYGIIMPIY NLFISIMTAG
IIASISKITA VYSARDDYKN IIRTMKVVAI FNFIWCLIIG IFVFFLSPII GHFWAKDPRI
IKSIMVTCPA MIFIALSNIL KGFFYGTSKI TVPSFIDILE KSLRIFVLAI LIFIFKAETL
ESLVTLAYLA LCLGELQSLI LLFGYFKYSM SKFPKTNAKG ESRAQLLFDV LVTSVPLCLN
GFLMSIFSVI STLLVPKRLI VAGFTYSQAL SLIGKYSSMA MSIVTFPIII VSSINTMLIP
DLSQTLSKGN YLSATKRIRD VIKIAFLIGI CTTVIGLCVP DSLGKLFFGR DDLGEYIRIT
SVMMPIVFTS NTMYGILNGL GRQNVILRNT IITEVLEVTL LFFLTAIPSI NIYGYAITML
IISSLSLCLN LYEIYKNINI GLSLSNFLIY ILTGVLTYIC LSPLSLKLSF IDFRIQVLAV
TSIAASIFIF LIIKEKFSSR FRKISLKSR
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