| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1888 |
|---|
| Symbol | |
|---|
| ID | 4202499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 2123730 |
|---|
| End bp | 2124374 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 638082757 |
|---|
| Product | V-type ATP synthase subunit D |
|---|
| Protein accession | YP_696321 |
|---|
| Protein GI | 110799634 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1394] Archaeal/vacuolar-type H+-ATPase subunit D |
|---|
| TIGRFAM ID | [TIGR00309] H(+)-transporting ATP synthase, vacuolar type, subunit D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAAA GATTAAATGT CAATCCTACT AGAATGGAAC TCTCAAAGCT AAAGAAAAGA
TTAGCAACAG CAACAAGAGG ACATAAATTA TTAAAAGATA AGCAAGATGA GTTAATGAGA
CAATTCATAA ATCTTATCAA ATATAATAAT CAATTAAGAG ATGAAGTTGA AAAGGAACTA
GGAAGTTCCT TAAAAGACTT CGTTATGGCT AGAGCTGTTA TGAGTTCAGA GTTCCTAGAG
GAAGCTATAG CATACCCTAA AGAAGAAATT GAGGTTGAAG TGGGAAATAA AAACATAATG
AGTGTAAATG TGCCTATAAT GAACTTCAAA AGAAAATTAG AAGGTGATGA AGGTAGTATT
TATCCTTATG GCTTTATGAA TACTTCAGCT GAACTTGATG ATGCAATTTC TAAACTATAT
GGAATTTTAC CAAAGTTATT AGAACTTGCA GAAGTTGAGA AATCTGGTCA GCTTATGGCA
GACGAGATAG AGAAGACAAG AAGAAGAGTT AACGCTCTTG AATATATGAC AATTCCTCAA
TTAAAAGAAA CTATCAGATA CATCAGAATG AAGCTTGATG AAAATGAGAG AAGTGCCTTA
ACAAGACTTA TGAAAGTTAA GTCTATGATA GAGCAAAGAG GATAA
|
|---|
| Protein sequence | MAQRLNVNPT RMELSKLKKR LATATRGHKL LKDKQDELMR QFINLIKYNN QLRDEVEKEL
GSSLKDFVMA RAVMSSEFLE EAIAYPKEEI EVEVGNKNIM SVNVPIMNFK RKLEGDEGSI
YPYGFMNTSA ELDDAISKLY GILPKLLELA EVEKSGQLMA DEIEKTRRRV NALEYMTIPQ
LKETIRYIRM KLDENERSAL TRLMKVKSMI EQRG
|
|---|
| |