Gene CPF_1878 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1878 
Symbol 
ID4201604 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp2112253 
End bp2115507 
Gene Length3255 bp 
Protein Length1084 aa 
Translation table11 
GC content28% 
IMG OID638082748 
ProductSnf2/Rad54 family helicase 
Protein accessionYP_696312 
Protein GI110800752 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0553] Superfamily II DNA/RNA helicases, SNF2 family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.456033 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAGTTG AAGATTTATT GTTACAAAGG TTTAAAGAAG AAACTACAGG AAGAAATTAT 
GCTAAGGGAC AAAGAATAAT AAATAACGAT CTTGTGGAGT CAGTAGAAAT AGAAGACGAG
GAAGATTTAG TAGCTGTTAA TGGAATAGTA ATTTCAGAAC AATTATTTAG TAAATATAGT
ACGAAATTAG AGATAGATAT TAGAAGTAGG GGGATTTTAT CAACATATTG TACCTGTACT
GATTATGAAA AACATGAGTT TAGTAAGGAA AATTATTGTT GTAAGCATTT AGTAGCAACT
TTTTATAAAG CTTTAGAGGA TTTAGCTAAG AAAAAAGAGT TTAAAGAGGA TAAAAACTTA
TTTTCTAAGA AGAAAGAAAA TAAAATTTTA GATTTAATTC TTCAAGAGGA AACAGATAAA
GAAGAGTTAA AAATAGAGGT TTATATAAAT AAAAATGAGT GGAGTAATAG CATATTAGCA
GAGTTTAAAA TAGGAACTAA GTCCATGAGT TCAAATAAAC TTTATATATT AAAGGATATT
GAACAATTTT TAGTAGCTTA CTATAATAGA ATACCTATTA AATATAGTAA GGTTTTTACT
TTTGATATAA GGGAACAAAA GTTAAGTACT AAGGATAGGG AGTTAATAGA GTTTATAGAA
AGCTTAAAAG AGATAGAAAA GCCAATAAAA AGCTTCTTAA GAAATAGAGA TACATTTATA
GAGGGTAAAA GCATAAAGAT ACCTAATTAT TTAGTAAGAG ATTTTTTTCG TGTTATAAAA
AATCATAGAA TTTATTTAAA TGAAGGATTT TTTTATAGAG CAGTAGAAAG TGAAGTGCTT
TTTGAAGATG TTCCAATAGA TTTTTCTCTA AAGGATTCAA AAAATAATTT TGAACTGAGC
TCCTTAAACG GAATGCCTAA GGTTTTAGGG GATAGAGCTG ATGTATTCTT ATATGGAACT
AATATATATA TTCCTAAAAA AGATTTTTGT TATAAAATAA AGAATTACTT AGATATATTT
TCTGAAGGAA AGGTCATAAA GATTGATAAA TGTGAAGAGG AAAGAGTATT TAGAAAGCTA
ATACCTTCCT TAAGAGATTT AACTGAGAAT GTAGTTCTTT CTAAAAATAT AATGAATAAG
ACGGTTTTAG AGCCTGTAAA ATTTAATTTT TACTTTGATA AAGAGGGGAA AGAAGTAACT
TTAACCTTAA AAGTAAAATA TGGTTCTTAT GAATTTAATA TATTTGATGA TTGTAAGGAA
AAAATAATAT ATAGAGATAT AAAAAAAGAA AAAGAATTAA TTGCCTTAAT TGAGAGATTT
AGCCTTGAAG AGATAAATAA AAAGTTTTAT TTCTATTTAG GAGATGAATA TATATTTAGC
TTTTTTAAGT ATGATGTATG CAAATTACAA GAGTATGGAG AAGTATATTA TTCAGAAAAC
TTTAAAGGTA TAAAAAGCTT AGGAAGCAAG GGGATAAAGG GAGACATTAA ACCAGGAAGA
TATAATTATT TTGAGTTTGA CTTTAAAATA GGAGATATAC CTAGTGAGGA AACAAGAGAA
ATACTTAGAG CTTTTAGGGA AAATTTAAAG TTTTTTAAAC TTAAAAGTGG AGAATTTCTT
GATTTAGAAG AACTAGAATT AAAGCAATTT TTAAAGTTAT TAGATTCAGT GGATAATGGA
GATTTAGAGA AAAATTGCCT AGAAATAAAT AATAGTAGGG CATTATATAT AGCTAATTAC
ATAGAAGAGA AGGGGATTAG ATATATTAAG GGGAAAAAGA AGTTAAATGA ATTGAAAAGT
AAATTTAAAA ATATAAATAA ACTGTCCTTT GAAGTTCCTA AGGATCTTAA GGCTAATCTT
AGAGAGTACC AAAAGTTTGG ATACAATTGG CTTAAAACTT TAGAGCATTT AGGCTTAGGG
GGAATTCTTG GAGATGAAAT GGGTCTTGGA AAAACTCTTC AAGCAATTAC CTTTATTCTT
TCTAATAAGG GAAAGAAAAC ACTAGTAGTA GCACCAACTT CCTTAATATA TAACTGGAAA
GAAGAATTCA ATAAATTTGC ACCTAATTTA GTTGTGGAGG TATTAAATGA AGGCAAGGAT
AAGAGAGAAG AAGCTTTAAG AGATATAGAG AGTAAGGATG TAATTATAAC TACCTATAAC
TTATTAAAAA GAGATTTAGA GGAATATAAG AAGATAAACT TTGATTATTG CTTTATTGAT
GAAGCGCAAG CTATTAAGAA CCCAGATTCT CAAAATTCTG AAGCTGTTAA AGAGGTTAAT
TCAGAATATA AATTTGCTTT AACTGGTACC CCTATGGAAA ATTCTCTTAT GGAACTTTGG
TCTATTTTTG ATTTTGTAAT GCCAGGATAT CTTTATGATA GAAAAAGATT CACTGTTAGA
TATTATAAAA AATTAAATGA AAGTGAAGAA GTGTTAAATG AAATACATAG CCTTATAAAA
CCTTTCATAC TAAGAAGAAA GAAAAAAGAT GTTATAAAAG AATTACCTGA TAAGATTGAA
AAGATGCACT TAGTTGATTT AGGGGAAGAT CAGAAAAAGG TATATTCAAT ATATGCTAAT
AATGCCTTAT CAATTATGGA AAAGAAACAG GATGCAGAGG AGTTTAATAA GAGTAAAATA
GAAATATTAT CTTATATAAC TAAACTTAGA CAATTAGCCT TAGACCCTGC TGTAACAATA
AATGATTATA TGGGGGAAAG TGCAAAAATA GAGGCTTTAG TTGAAATATT AAATCAAGGA
ATAGAAGAAG GACATAAAAT CCTTGTGTTT TCACAGTTTA CTTCAGTATT AAAAAATATA
AGTAGTAGAC TTAAGGAAGA AAAAATTTCT TTTAGTTACT TAGATGGAAG TGTTTCATCT
AAGAAAAGAA TAAATATGGT TAATGAATTT AATGAAGGTG AAAACTCAGT ATTTTTAATA
AGCTTAAAAG CTGGGGGAAC AGGACTTAAC TTAACTTCAG CAGATATTGT AATTCATTTT
GATCCTTGGT GGAATCCAGC AGTAGAAAAT CAGGCAACGG ATAGAGCACA TAGAATGGGA
CAAAAAAATG TAGTAGAGGT TATAAAATTA ATAGCTAAAG GAACTATTGA GGAAAAGGTA
GTAGCTCTTC AAGAGGAGAA GAAGGAATTG ATTTCTAAGA TTATTGAAGA GGGAGAATTA
GGAGCAGGAA GTACATTTAA TACCTTAAGT GAAGAAGAGT TGATGGATTT ATTTAAAGTA
GATTATTTAG GTTAA
 
Protein sequence
MLVEDLLLQR FKEETTGRNY AKGQRIINND LVESVEIEDE EDLVAVNGIV ISEQLFSKYS 
TKLEIDIRSR GILSTYCTCT DYEKHEFSKE NYCCKHLVAT FYKALEDLAK KKEFKEDKNL
FSKKKENKIL DLILQEETDK EELKIEVYIN KNEWSNSILA EFKIGTKSMS SNKLYILKDI
EQFLVAYYNR IPIKYSKVFT FDIREQKLST KDRELIEFIE SLKEIEKPIK SFLRNRDTFI
EGKSIKIPNY LVRDFFRVIK NHRIYLNEGF FYRAVESEVL FEDVPIDFSL KDSKNNFELS
SLNGMPKVLG DRADVFLYGT NIYIPKKDFC YKIKNYLDIF SEGKVIKIDK CEEERVFRKL
IPSLRDLTEN VVLSKNIMNK TVLEPVKFNF YFDKEGKEVT LTLKVKYGSY EFNIFDDCKE
KIIYRDIKKE KELIALIERF SLEEINKKFY FYLGDEYIFS FFKYDVCKLQ EYGEVYYSEN
FKGIKSLGSK GIKGDIKPGR YNYFEFDFKI GDIPSEETRE ILRAFRENLK FFKLKSGEFL
DLEELELKQF LKLLDSVDNG DLEKNCLEIN NSRALYIANY IEEKGIRYIK GKKKLNELKS
KFKNINKLSF EVPKDLKANL REYQKFGYNW LKTLEHLGLG GILGDEMGLG KTLQAITFIL
SNKGKKTLVV APTSLIYNWK EEFNKFAPNL VVEVLNEGKD KREEALRDIE SKDVIITTYN
LLKRDLEEYK KINFDYCFID EAQAIKNPDS QNSEAVKEVN SEYKFALTGT PMENSLMELW
SIFDFVMPGY LYDRKRFTVR YYKKLNESEE VLNEIHSLIK PFILRRKKKD VIKELPDKIE
KMHLVDLGED QKKVYSIYAN NALSIMEKKQ DAEEFNKSKI EILSYITKLR QLALDPAVTI
NDYMGESAKI EALVEILNQG IEEGHKILVF SQFTSVLKNI SSRLKEEKIS FSYLDGSVSS
KKRINMVNEF NEGENSVFLI SLKAGGTGLN LTSADIVIHF DPWWNPAVEN QATDRAHRMG
QKNVVEVIKL IAKGTIEEKV VALQEEKKEL ISKIIEEGEL GAGSTFNTLS EEELMDLFKV
DYLG