Gene CPF_1865 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1865 
Symbol 
ID4201680 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand+ 
Start bp2099263 
End bp2099916 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content26% 
IMG OID638082735 
ProductDedA family membrane protein 
Protein accessionYP_696299 
Protein GI110798627 
COG category[S] Function unknown 
COG ID[COG0398] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.0119773 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGAAAT TTTATAAATT TTTAATTTCT ATAATAATAT TAGCCTTAGT TTGTCTTATA 
TTTTTCCTTG CTAAGAGTAA TATATTAAAT TTAGATAGCT TAAAAAACTT AATTTTAAGT 
TCTGGATATT TCGCTCCCCT AATTTATATA ATAGCCTTTG CCTTAGTTCC ATTAACTTTT 
TTCCCTGATT CAGTACTAGC AATCTTAGGT GGAAGTATAT TTGGACTAGG AGGAGGATTC 
TTATATACAA GTATTGGTGC TTTAATAGGA GGAAGTATAT CTTTCTTTAT TTCTAGAATC 
CTTGGTCAAT CCTTTGTGGA AAAGTTTGAA AATGATAAAC TTAAAAACAT ACAAGAATTA 
TTAAAGGACA ATGGATTTTT AATGATTCTA CTTTTAAGAT TAATCCCTCT TTTCCCCTTT 
GATTTAATAA GCTATGGAGC TGGTCTTACT AAAATATCCT ATAAAGACTT TGCTTTAGGT 
ACTTTAATAG GAACTATTCC TGGCATATTA GTTTTTGTAA ATTTAGGAGC TCAATGGATT 
ACTTTTAACA AAACAAGTAT ATATCTATCT GTAAGTCTAT TAATATTATT TATAATAGTA 
TCTGTGTTCT TAAAGAAAAT TTATATAAAT AAACATTTAG CAAAAGAGAA TTAA
 
Protein sequence
MTKFYKFLIS IIILALVCLI FFLAKSNILN LDSLKNLILS SGYFAPLIYI IAFALVPLTF 
FPDSVLAILG GSIFGLGGGF LYTSIGALIG GSISFFISRI LGQSFVEKFE NDKLKNIQEL 
LKDNGFLMIL LLRLIPLFPF DLISYGAGLT KISYKDFALG TLIGTIPGIL VFVNLGAQWI 
TFNKTSIYLS VSLLILFIIV SVFLKKIYIN KHLAKEN