Gene CPF_1852 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1852 
Symbol 
ID4202449 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand- 
Start bp2088792 
End bp2089373 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content27% 
IMG OID638082722 
Productthiamine monophosphate synthase family protein 
Protein accessionYP_696286 
Protein GI110800085 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0352] Thiamine monophosphate synthase 
TIGRFAM ID[TIGR00693] thiamine-phosphate pyrophosphorylase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.181009 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTTTAA TAACAAATAG AAAGTTAGTA AATAGGGAAA AATATTTTAA TACCATAGAG 
GAAGCAGGTA AATATGGTGT TAAAAATATA ATTTTAAGAG AAAAAGATTT AAGTACAAAG 
GAATTAATAA AGATTTATAT AAAAATAAAA GAGTTAGTTA CAGAGGAAAC AAATATAATA 
ATAAATTCCA ATATTGAAGC AACAATGATT TTGAAAGAGA AGTTTATTCA TTTAAGCTTT 
AAGGATTTTA AGAGGAATTT AGAAGAAGTT AAATCCTTAC AGGTTGGAGT ATCTGTTCAC 
TCTATCTTAG AGGCCATAGA GGCTGATAGA TTAGGGGCAA GCTATATATT AGTATCTCCT 
ATTTTTGAAA CACAATGTAA GAAGGGAGTA ACTCCTAAGG GAATTAATTT TATAAAAGAA 
ATTAAGGAAA AGGTAAATTG TAATGTCATA GCCTTAGGAG GAATAAATGA ACATAACTTT 
AAAGAAGTAT TAGGGGCTGG CGCTGATGAT TTTGCATGTA TGTCACTTTT ATTTATGAGT 
AATAATATAA AGAAGTCCTT ATATACTTTT AAATCTCTTT AA
 
Protein sequence
MFLITNRKLV NREKYFNTIE EAGKYGVKNI ILREKDLSTK ELIKIYIKIK ELVTEETNII 
INSNIEATMI LKEKFIHLSF KDFKRNLEEV KSLQVGVSVH SILEAIEADR LGASYILVSP 
IFETQCKKGV TPKGINFIKE IKEKVNCNVI ALGGINEHNF KEVLGAGADD FACMSLLFMS 
NNIKKSLYTF KSL