| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1842 |
|---|
| Symbol | |
|---|
| ID | 4202583 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 2079978 |
|---|
| End bp | 2080748 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 638082712 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_696276 |
|---|
| Protein GI | 110799659 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2966] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTTA ATAGAATTAT CAATTTCTCA ACTGAACTTG GTACTCTAAT GCTTGAAAAT
GGCGCTGAAA CGTATAGAGT TGAAGAAACC ATGAGCAGAA TCTGTTTGGC TTATGGAATA
GAAAAAGTTG ATGTTTTTGT AATTCCTACA AACATAATAA TAACAATAAA AACATATAAA
AATGCAATTT CTAGAACTAG AAGGGTAACA AGTAGAACTA TTAATTTAGA TAAAATAGCT
AAATTAAACA ACCTTTCAAG AGAGGTTGCC TTTAATAAAG TTTCTATTGA AGATGCTGAA
AAAAAGCTAA GTAGTATAGC TGATGAAAAA GAATATCCTC TTAAAATAAA AATATTAGGA
TATTTAATTT CAGCTTCAAC ATTTACTCTA CTTTTTGGAG GTAATTTAAA GGATTCTTTA
GTCTCAGGTT TTATAGGAAT AGTTCTTTGT CTTCTTGCAT ACTTTTTTAA TATTTTAAAG
ACAAATAATT TCTTTGTAAA TATAATATCT GGAGCTTTGG CATCATTGCT AGCTTTTCTT
GCAGTAAGAT TTAATATTGC TCCTAATCTA AATGAAATAA TAATAGGTTC TTTAATGCCC
TTAGTACCTG GACTTGCTAT AACTAACTCA CTTCGTGATA TAATAGCTGG TGATTTAGTT
GCTGGAAGTG CTAAATTTAT TGAAGCCTTT TTAATAGCTG TAGGAATTGC TATTGGAAGT
GCTAGTATTT TATCTATATT AATAAATCAC TATGGGGGTA TGGCTATATG A
|
|---|
| Protein sequence | MDFNRIINFS TELGTLMLEN GAETYRVEET MSRICLAYGI EKVDVFVIPT NIIITIKTYK
NAISRTRRVT SRTINLDKIA KLNNLSREVA FNKVSIEDAE KKLSSIADEK EYPLKIKILG
YLISASTFTL LFGGNLKDSL VSGFIGIVLC LLAYFFNILK TNNFFVNIIS GALASLLAFL
AVRFNIAPNL NEIIIGSLMP LVPGLAITNS LRDIIAGDLV AGSAKFIEAF LIAVGIAIGS
ASILSILINH YGGMAI
|
|---|
| |