| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1811 |
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| Symbol | |
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| ID | 4202374 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 2044877 |
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| End bp | 2046568 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 26% |
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| IMG OID | 638082681 |
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| Product | GGDEF/HD domain-containing protein |
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| Protein accession | YP_696245 |
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| Protein GI | 110800454 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR00277] uncharacterized domain HDIG |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.63619 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTAGGG ATGTAAATGA TAATAAAAAG AAAAAAGTTG ATGAAATATT ATCAATAGTA
AAAGTATCAT CATTATTATT TTCAGCTATG GCTTTTTTAC AATACACCTT TAATCTTACA
AAGTATAACA ATAAATTTTT AGCGTATTAC AGTATATTAT CAATTTTAAT AAGTATATTC
TTATTATCAA CGATTTACAT ACTTTGGAGT TTAGCTAGTT TAAACAAATA TAAAGATCAT
ATAAATAAGA TACAATTAAT AGAAATAATT TTATTTATGA TTATATTTAT AATGGCTATA
TTAGTTTCAG GAGGGAATTC TAGTAATAAT AAATTTTTAT TTTTATTTAT TATAATAACA
TCTACAATAC AGGGGGGCAT GCATAGAGGA TGTGTGGTTT CTGTAGTGTC ATCAGCTATT
ATTTTAGCTA TAGATTTGAT TTTTTCAGGG AATGCTGATG TAAATATTTA TTTTCAAAAT
GATTTAATAT TAGCAGGAGT ATTTGTTTTA ACAGCTTGGA CATTAGGTTT TTATGTAAAA
ACTGAAAATG ATCACATAAA GGAATTACAA ACCTTGGTTA ACGAAGATGG ATTAACAGGG
GTTTATAATC ATAGATATTT TTATGATAAA TTAAGAGAGA AAATGCATAT TAGTGAGGTT
GAAAATGAGA AACTATCATT AATATTTATG GATATAGATT ATTTTAAGCA TTATAACGAT
TTGTATGGAC ATCAAAAAGG TGACGAAGCA TTAAAGAAAA TAGGAAAACT TCTAAAAAAT
ATAGCTAGAG AAAATGATTT AGTAGCTAGA TATGGAGGAG AAGAGTTTGC AATAATTTTA
CCTAATACTT CAGAAGAGGA AGCTACTAAA ATTGCAGAAA GAATTAGAAA TAAAGTAGAA
AAAACATATT TTGAAGGACA AGAAAATCAA CCTAATGCTA ATTTTACAGT ATCTGTTGGT
ATAGCTGTAT TCCCAGATAA AGCTAAAAGT GAGCTAGAAT TAGTTAAATG TGCTGATGAT
GCATTATATA GAGCTAAATT TTTCCATAAA AATAGAGTTG AAACTTATGT ATCTGTTTTA
GATGAATTAA AACGAGATTT AAATGAAGAG GAAAATGCTC TTGTAGCATC TATAAAAACT
TTAATAAGTA TTATAAATGC AAAGGATAAA TATACATATA GCCATGTAGA AAGAGTAGTT
ATTTATAGCA GACTTATGGC TAAAAAATTA GGACTTTCAG AAGATGAGAA AAAGCAGTTA
ATATATGGAG CTTATATGCA TGATATAGGT AAAATAAATA TACCAAATGA AATATTAACT
AAAAAGATGA GACTTACTAA AGAGGAATGG GAGATTTTAA AGCAACATCC TAAAGATGGA
GTAGAAATAA TAAAATCAGT AAATTCCTTA AAGAATGTTG TGCCTCTTAT TTTATATCAT
CATGAGAGAT ATGATGGTTT TGGATATCCA GTAGGATTAA AGGAGAAAGA AATACCATAC
TTAGCAAGGG TCTTAACTGT AATAGATAGT TTTGATGCTA TGACTTCAAG TAGGCCTTAT
AATAAAAGAA AAACTTATGA TGAAGGATTA ATAGAACTAG AAAGATGTAG TGGAACTCAA
TTTGATCCAG AAATAGTTGG TATTTTTAGT GAAGTGGTTA AGGAAAATAT AAATGAAATA
CAAGATTTTT AA
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| Protein sequence | MIRDVNDNKK KKVDEILSIV KVSSLLFSAM AFLQYTFNLT KYNNKFLAYY SILSILISIF
LLSTIYILWS LASLNKYKDH INKIQLIEII LFMIIFIMAI LVSGGNSSNN KFLFLFIIIT
STIQGGMHRG CVVSVVSSAI ILAIDLIFSG NADVNIYFQN DLILAGVFVL TAWTLGFYVK
TENDHIKELQ TLVNEDGLTG VYNHRYFYDK LREKMHISEV ENEKLSLIFM DIDYFKHYND
LYGHQKGDEA LKKIGKLLKN IARENDLVAR YGGEEFAIIL PNTSEEEATK IAERIRNKVE
KTYFEGQENQ PNANFTVSVG IAVFPDKAKS ELELVKCADD ALYRAKFFHK NRVETYVSVL
DELKRDLNEE ENALVASIKT LISIINAKDK YTYSHVERVV IYSRLMAKKL GLSEDEKKQL
IYGAYMHDIG KINIPNEILT KKMRLTKEEW EILKQHPKDG VEIIKSVNSL KNVVPLILYH
HERYDGFGYP VGLKEKEIPY LARVLTVIDS FDAMTSSRPY NKRKTYDEGL IELERCSGTQ
FDPEIVGIFS EVVKENINEI QDF
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