| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1752 |
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| Symbol | |
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| ID | 4201744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 1970977 |
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| End bp | 1971687 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 26% |
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| IMG OID | 638082624 |
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| Product | LytTr family DNA-binding response regulator |
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| Protein accession | YP_696188 |
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| Protein GI | 110801070 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000046925 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTTAGTA TTGCCTTATG TGAAGATAAT TCCTTGCAAA GAGAAGAATT AAAAAATAAT
TTAAGTAAAG TTTTAGATGA AATAGGAGTA GAGTATAAAC TTTTAACCTT TGAGACAGGA
GAGGATCTAT TAAGGGAATA TCCAGAAAAT TTGGACATGC TTTTTTTAGA TATTCAAATG
GGTGAGTTAA CAGGAATGGA GACTGCTAGA AAGGTTAGAA AGTATGATGA TAAAGTTGAG
ATTATATTTA TAACTGCTTT ATGGGATTAT ATTCAAAAAG GTTATGAAGT TCGTGCTTTT
AGATATTTAA TAAAGCCAGT TAAATTTAAG GAGCTACAAG AGCAGGTTAC AGCTTGTGTA
GAAAATATTT TACATAAAAG ATATACATAC ATAACAATAA AAGATAAAAA TAATGTTTTA
AAGATTAGAA CAGAAGATAT ACTTTTTCTT GAGACTTTTG AGAGAAAGGT AATAATACAT
ACTAATTCTC AAGATTATAT AGTAAAGATG AGTATGAATA AACTAGAAAA GGAGCTTAAT
AATAAGGGCT TTTTTAGATG TCATACTAGT TATATTGTAA ATTTAATAAA GATAGAAGAG
ATTAAAAAGG ATTATCTTTT AATAAATAAA TTTACTTTAC CTGTAAGTAA GCATAGAATG
AAAAATTTAA AATTAAGGTT AACTAGCCTT TTAGGGGATT TAATATGTTA A
|
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| Protein sequence | MFSIALCEDN SLQREELKNN LSKVLDEIGV EYKLLTFETG EDLLREYPEN LDMLFLDIQM
GELTGMETAR KVRKYDDKVE IIFITALWDY IQKGYEVRAF RYLIKPVKFK ELQEQVTACV
ENILHKRYTY ITIKDKNNVL KIRTEDILFL ETFERKVIIH TNSQDYIVKM SMNKLEKELN
NKGFFRCHTS YIVNLIKIEE IKKDYLLINK FTLPVSKHRM KNLKLRLTSL LGDLIC
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