| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1735 |
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| Symbol | |
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| ID | 4203508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 1956329 |
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| End bp | 1957657 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 638082607 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_696171 |
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| Protein GI | 110799573 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00244827 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCAAAA AATTAGATTT ACTACAGGAT AAAGAAAGTA CATTATTAAG AAAATATATG
ATACCTTCAG TTGCAGGAAT GTTAGGCTTA TCAGTGTGTA TATTATTTGA CACCATGTTT
ATAGGTCATA AAATCGGAGA ATTAGGCTTA GCTGCACTAA ATATAGCCTT GCCAATATAT
AATTTATATA GTGCCATAGG GCTTACTATT GGAGTTGGAG GAGCAACAGC CCTATCCGTA
GCTATGGGGC AAAAAAAATT CCATAGGGTA AATAGAATAT TTACTTCGGC AGTATTTGCA
ACTATCATAT TTTGTATAAT AATAAGTTTA TTAGAAGTTT TCTTTTTAGA TAAAATAGTT
TATATGCTTG GAGCTTCAGA AGCAACCTTT CCTTTAGCTA AAGAATATTT AAAGATTATT
TTAGCCTTTA ATCCTGCTTT TATTTTTGCA TCTGCATTTA TTGTTTTTGT TAGAAATGAT
AGAGAGCCTA AATTAGCTAT GTATGCAGTA ATAGGATCAA ATACAACTAA TATAGTACTA
GACTATGTAT TTATATATAT ATTTAATCTA GGAATGTTTG GAGCAGCTTT AGCAACATCT
ATAGGGCAAT TGGTAGCCTT AGGAGTTTTA TCAATACATT TTATAAAGAA AAATAATACC
ATGCATATAG AACTTGGAGG AATAAATTTA GATAATATAG GAAAGGTACT TAAAAATGGA
GTGCCTAGTT TCTTAAATGA AATATCAGCA GGCTTTGTCA TATTTATTTT TAATATTGTA
ATATATAAAT TTGAAGGAGA CTTAGGAGTT TCAGCCTATG GAATAATTAC AAACATAGTT
TTAATATTCA TGGCAGTCTT TAATGGAGTA TCCCAAGGGG TTCAACCTTT AATAAGCGTA
AATTTTGGAG CTAAAAAGGA AGAACGTGTT AAAGAATTCT TAAGGTTAAC AAGAATAATA
GTACTAATTT TAGGTGTAGG TTTTCTAGGT ATGGGACTAT TATTACCAAA TCAAATGATA
GGACTATTTA CAAGTGATAG GGGAAGATTA TTAAGTATAA CTAGACAGGG AATATATCTA
TACTTTATAG CATTCTTATT TAATGGAAGC AACATACTTA ACATAGCTTA TTTACAAGCA
GTTGAAAAAT CAAAGGAATC ATCTCTTTTA TCAACACTTA GAGGATTAGT ATTTGTTATT
ATATTTATAA TAGTCTTACC AAGAATTATA GGGGTTTATG GAGTATGGCT AACAATTCCA
ATAACTGAGT TAAGTACACT TTTATTATTT TTAATATTTG AAATAAAAAG TAAAAGAAAA
AATATATAA
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| Protein sequence | MSKKLDLLQD KESTLLRKYM IPSVAGMLGL SVCILFDTMF IGHKIGELGL AALNIALPIY
NLYSAIGLTI GVGGATALSV AMGQKKFHRV NRIFTSAVFA TIIFCIIISL LEVFFLDKIV
YMLGASEATF PLAKEYLKII LAFNPAFIFA SAFIVFVRND REPKLAMYAV IGSNTTNIVL
DYVFIYIFNL GMFGAALATS IGQLVALGVL SIHFIKKNNT MHIELGGINL DNIGKVLKNG
VPSFLNEISA GFVIFIFNIV IYKFEGDLGV SAYGIITNIV LIFMAVFNGV SQGVQPLISV
NFGAKKEERV KEFLRLTRII VLILGVGFLG MGLLLPNQMI GLFTSDRGRL LSITRQGIYL
YFIAFLFNGS NILNIAYLQA VEKSKESSLL STLRGLVFVI IFIIVLPRII GVYGVWLTIP
ITELSTLLLF LIFEIKSKRK NI
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