Gene CPF_1716 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1716 
Symbol 
ID4202412 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand- 
Start bp1939665 
End bp1940162 
Gene Length498 bp 
Protein Length165 aa 
Translation table11 
GC content32% 
IMG OID638082588 
ProductPTS system, IIB component 
Protein accessionYP_696152 
Protein GI110800107 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3444] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAACTC AAATACGTGT AGATGACCGT TTAATACATG GACAAGTAGC AGTAGTATGG 
ACAAAGGAGC TAAATGCACC ACTTTTAGTA GTAGCAAATG ATGAGGCTGC AAAAAATGAA 
GTTATGCAAA TGACTTTAAA AATGGCTGTA CCAAATGGAA TGAAACTTTT AATTCGTTCA 
GTTGAGGATG CTATAAAAGT TTTTAATGAT CCTCGTGGTA AGGATAAAAG AATGTTTGTT 
ATAGTAAACA GTGTATCAGA TGCTACAAAG ATTGCTAAAG AAGTTAGTGA TATAGAATCT 
GTAAACGTTG CTAATGCAGG ACGTTTTGAC AAATCTAATC CAAAAGACAA AGTAATGGTA 
TTTTCAAGTG TTCAATTAAA TCCAGATGAA TTAAAAGCTG CTAAGGAATT ATCAGAGCTA 
ACTAATGTTA AATCTTATAA TCAAGTATTA CCATCAAATC CACAGCTTGA TTTAAAGAAA 
GCTTTAGCAC AATTTTAA
 
Protein sequence
MITQIRVDDR LIHGQVAVVW TKELNAPLLV VANDEAAKNE VMQMTLKMAV PNGMKLLIRS 
VEDAIKVFND PRGKDKRMFV IVNSVSDATK IAKEVSDIES VNVANAGRFD KSNPKDKVMV 
FSSVQLNPDE LKAAKELSEL TNVKSYNQVL PSNPQLDLKK ALAQF