Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1706 |
Symbol | pepF |
ID | 4203025 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 1928365 |
End bp | 1930164 |
Gene Length | 1800 bp |
Protein Length | 599 aa |
Translation table | 11 |
GC content | 28% |
IMG OID | 638082578 |
Product | oligoendopeptidase F |
Protein accession | YP_696142 |
Protein GI | 110801429 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1164] Oligoendopeptidase F |
TIGRFAM ID | [TIGR00181] oligoendopeptidase F |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.615745 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGTGAGG TCAAAAAACT TAGAAGAAGA GATGAAATTC CAGAAAGTGA TAAGTGGAGA ATTGATAAAA TTTATGAAAC TCCAGCTAAA TGGAATGAGG AATTAAATAA GTTAAAAGAG GAAGCTCCAA AATTAAAAGA TTTTGAGGGA AAGTTAGGAA ACAAGGAAGA CTTAAAAGCT TTTCTTTTAT TAAATGAAAA GTTAAGCAGA AAACTTGGTA AACTATATGT TTATGCTCAT ATGAGAAGTC ATGAGGACAC ATCTAATCCT GAAATGCAAT CTTTAGTAAA TAAAATAGAT CCATATTCAG CAGAGTTTTC AAGTTATACT GCATACTTTG TTCCAGAGAT ATTAAGCTTA AAAGAAGGAA CAATAGAAAA TTTCATAAAT GAGGATAAGG ATTTAAAACA ATATAAAATA TATTTTGAAA TGATATTAAA TGAAAAGCCT CATATATTAT CAAAGGAAGT TGAATCTGTT TTAGCTTCTG TATCAGATTG TTTAGGAGCT CCAGAGAGCA TATATTCAAT GCTTACTAAT TCAGATATGA CTTTTGGAGA GATAGTAGAT GAAAGTGGTA GAAAGGTAGA ATTAACTGAA GGAAACTATA TTTCTTTTAT AAAGAGCAAA GATAGAAAGG TAAGAGAAGC TGCCTTTAAA CTTTTATTTG GAACATACAA AAAGTATGAA AATACTTTAG CAACAAGTTT AACAAGTTCT ATTAAAAACT TTGTTTTTGA AAGCAAAACA AGAAAATATA ATAGTTCCTT AGAGGCTTCT TTAAAACCTA ATAATATTCC AGTAGAAGTT TACTATAATG CTTTAAAAAC TGTAGATGAA AATATGGATG CTCTTCATAG ATATGTTAGA ATTAAGAAAA AACTTCTTAA CTTAGAAGAA ATTCATATGT ATGATTTATA TGTTCCAGTT ATAGAATGCA AAAAAGAACA TTTAGAGTAT AAGGATGCCA TAAGTTTAGT TGAAGAAGGA TTAAAACCTT TAGGAAAAGA ATATTTAGAC ATATTCAATG AAGGAATAAA TGAAGGTTGG ATAGATGTAT ATGAAAATAA AGGAAAGAGA AGTGGAGCTT ATTCATGGGG ATCCTATGAT ACTATGCCAT ATGTATTATT AAACTATAAT TATGAGTTAA ATGATGCATC AACTTTAGCT CATGAAATGG GTCATTCAAT ACATTCTTAT TATACTAGAA AGACTCAACC TTATATTTAT GGAGATTATA GTCTTTTCTG TGCAGAAGTT GCTTCAACAA CAAATGAAAT TTTACTTATA CATCATTTAA TAGAGAAAGA AACTGATAAA AATAAAAAAT TATATCTAAT AAATCAAGAG TTAGAGCAAA TAAGAACAAC TGTCTTTAGA CAATTAATGT TTGCAGAATT TGAGTTAAAA ACTCATGAAG CTATTGAAAA TGGAGAATCT CTTACATCAG AAGTTTTATG TAAGATGTGG AAAGATATAA ACATTAAATA TTTTGGTAAA GATATGAATG TAGATGAAGA AATATCTATA GAATGGGCTA GAATACCTCA TTTTTATTCT GATTTCTATG TATATCAATA TGCTACAGGC TATGCAGCTG CATCTTCCTT TGCAAATTCA ATTCTTTCAA AAGGAGAAGA GGCTGTTGAA AAATACAAAG GTTTCTTAAA GGCTGGAGGA TCAATGTATC CTATAGATAC ATTAAAAATG GCTGGAGTAG ATATGACAAC ATCTAAGCCT CTTAAAGATA CCTTAGATAG ATTTAATGAG CTTTTAGATA TGTTGGAAGA AATTATTTAG
|
Protein sequence | MSEVKKLRRR DEIPESDKWR IDKIYETPAK WNEELNKLKE EAPKLKDFEG KLGNKEDLKA FLLLNEKLSR KLGKLYVYAH MRSHEDTSNP EMQSLVNKID PYSAEFSSYT AYFVPEILSL KEGTIENFIN EDKDLKQYKI YFEMILNEKP HILSKEVESV LASVSDCLGA PESIYSMLTN SDMTFGEIVD ESGRKVELTE GNYISFIKSK DRKVREAAFK LLFGTYKKYE NTLATSLTSS IKNFVFESKT RKYNSSLEAS LKPNNIPVEV YYNALKTVDE NMDALHRYVR IKKKLLNLEE IHMYDLYVPV IECKKEHLEY KDAISLVEEG LKPLGKEYLD IFNEGINEGW IDVYENKGKR SGAYSWGSYD TMPYVLLNYN YELNDASTLA HEMGHSIHSY YTRKTQPYIY GDYSLFCAEV ASTTNEILLI HHLIEKETDK NKKLYLINQE LEQIRTTVFR QLMFAEFELK THEAIENGES LTSEVLCKMW KDINIKYFGK DMNVDEEISI EWARIPHFYS DFYVYQYATG YAAASSFANS ILSKGEEAVE KYKGFLKAGG SMYPIDTLKM AGVDMTTSKP LKDTLDRFNE LLDMLEEII
|
| |