Gene CPF_1703 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1703 
Symbol 
ID4203512 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand- 
Start bp1925590 
End bp1926219 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content30% 
IMG OID638082575 
Productputative ribonuclease HI 
Protein accessionYP_696139 
Protein GI110799769 
COG category[R] General function prediction only 
COG ID[COG3341] Predicted double-stranded RNA/RNA-DNA hybrid binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0820498 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTAAAA AATATTATGC TATAGCAAAA GGAAAATCAG GGATTCCTAA GATTGTTGAG 
ACTTGGACAG AATGCCAAAA AGAAGTAATA GGATGTAAAG GCGCTAAGTA CAAAAGTTTC 
GCTTCAAAGG AAGAGGCAGA AAAGTTTATT TCTATTCATG AAAATGGAGG AAGCTTTGAG 
GAAGTTAAAG GAAATGAAGA GGTTAAGGAT GATTTAATTT ATATTTACGT AGATGGTAGC 
TTTATGGTTT CTAAAGAAAA TTATTCTTAT GGCTTCTTAG TAGTAAAAAA TGATGAAATA 
TTATATGAAG ATAATGGTGT TGGATATGAT AAAGAAGCAA TAGCTCTAAG AAATGTATCC 
GGAGAAGTTG AAGGAGCTAT GAAGGCAATT GAATATGCCA TAGAAAATGG ATATAAAGAT 
ATAGTTCTTT GTTATGATTA TCAAGGAATT GAGAGCTGGG CTTTAGGAAC TTGGAAAAGA 
AATAATAGAA TAACTCAAAA TTATAATGAG TTTATGCAAG AAAAATTTAA ACTCATAAAG 
GTTAGATTTA AAAAAATAAA AGGACACAGC GGAAATAAAT TTAATGATAG GGCAGATATA 
CTTGCCAAAA AAGCATTAGA AAGTCTTTAA
 
Protein sequence
MAKKYYAIAK GKSGIPKIVE TWTECQKEVI GCKGAKYKSF ASKEEAEKFI SIHENGGSFE 
EVKGNEEVKD DLIYIYVDGS FMVSKENYSY GFLVVKNDEI LYEDNGVGYD KEAIALRNVS 
GEVEGAMKAI EYAIENGYKD IVLCYDYQGI ESWALGTWKR NNRITQNYNE FMQEKFKLIK 
VRFKKIKGHS GNKFNDRADI LAKKALESL