Gene CPF_1680 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1680 
Symbol 
ID4202966 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand- 
Start bp1897955 
End bp1898635 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content31% 
IMG OID638082554 
Producthypothetical protein 
Protein accessionYP_696118 
Protein GI261876157 
COG category[S] Function unknown 
COG ID[COG3819] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.936458 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGAACTGA TAGGAATAGT AATAGTAATA ATAGGATTTG CACTTAAATT TGATACTATA 
GCAGTTGTAT TAGTAGCAGG ACTATCAACT GGATTAGTAG CACATATGAG TTTATATGAA 
ATATTAGAAA AATTAGGATC AACCTTTGTA AGCCAAAGAC ACATGACATT ATTTATATTA 
ACCTTACCTG TAATAGGTAT GTGTGAAAGA TTTGGCTTAA AAGAGAGAGC TATAACCTTA 
ATAAAGAATA TGAAAAATAT GTCAACTGGA AAGCTTTTAA GTTGCTATTT ATTTATTAGA 
GAAGTTGGGG CTGCAGTTTC ACTAAGATTA AGTGGACAAG CACAATTTAT AAGACCACTT 
ATAAATCCAA TGGCTCAAGG AGCAGCTTTC AGTAAATATG GAGAATTAGA TGATAAAAAT 
GAAGATTTAA TAAAGGGAAC AGCAGCTGCA ATGGACAACT ATGGAAACTT CTTTGGACAA 
AATGTATTCT TAGCAAGTTC AGGAGTTCTT TTAATAGCAG GAACCTTAGA AGAACTAGGA 
TATGGAGTTA ATGCTTTAGA TATAGCAAAA GCTTCAGTTC CAATAGCTAT AATAGCTTTA 
ATATTAGGAG TATTACAAAA TAGATTATTA GATAAAAGGT TAAGTAGAAA CCTATCAAAG 
AACAAAGAAG AGATAAAATA G
 
Protein sequence
MELIGIVIVI IGFALKFDTI AVVLVAGLST GLVAHMSLYE ILEKLGSTFV SQRHMTLFIL 
TLPVIGMCER FGLKERAITL IKNMKNMSTG KLLSCYLFIR EVGAAVSLRL SGQAQFIRPL 
INPMAQGAAF SKYGELDDKN EDLIKGTAAA MDNYGNFFGQ NVFLASSGVL LIAGTLEELG 
YGVNALDIAK ASVPIAIIAL ILGVLQNRLL DKRLSRNLSK NKEEIK