Gene CPF_1614 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1614 
Symbol 
ID4202588 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp1823380 
End bp1827795 
Gene Length4416 bp 
Protein Length1471 aa 
Translation table11 
GC content33% 
IMG OID638082492 
Productglycosy hydrolase family protein 
Protein accessionYP_696057 
Protein GI110799664 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3525] N-acetyl-beta-hexosaminidase 
TIGRFAM ID[TIGR00148] UbiD family decarboxylases 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAGGT TAATAGCTTG TGGAATAGCA GCAAGTATAG TTTCAGTTAA TGGATTATCT 
GTTCTTGCTT CTGAGTTAAA TAAGTCAGAT AAAGTTAATT TAGCTTTAAA CAAAAAAACT
GTTGCCTCTT CAAGAGAAGT TAATGACAAA TGGGGTGCAG AATTAATAAC TGATGGTATT
AAGGATAAGC CAAGTGATCC AAATGCTAAG CCAGGAAATT CTAGGTGGGC TAGTTCAAGA
AGTGTACCAC AATGGATATA CATTGATTTT GAAGAAGCAA CAACCTTTGA TCAAGTTGAT
ATACTTTGGG ATGGTGCATA TTCAAGAAAT TATAAATTAG AGGTTTCTAA TGATGGGGAA
ACTTGGGAAG AAGTTTACGC AACTAGTGAG GGGAAAGGAA ATCAAGAGTC TATAAATCTT
GGAGAAGATA TAACTGCTAA TTATTTAAGA GTTAGTTGTG AAGATACAGC TCATGAATGG
GGAAATGTAT CAATATATGA AGTTGAGGTT TATGATAACG AAAATGAGGA AAATGTAACT
CCTCCAGAAA CAGAGATAGG AGTTAATATT GCTTTAAATA AAACTGCTAC GGCATCAGCA
TCAGAAACTA ATACACTTAC TCCAGACAAA GTTGTAGATG GAGATACATC TTCAAGAAAT
TCAAGATGGT CAAGTGGAGG ATTTTCTAAT GGTGCTAAAC AGTGGATAAC TATTGACCTA
GAAAAGGAAA GCACTTTTGA CAAGGTTAGA TTATTCTGGG AAGCTGCCAA CGCTAAGGTC
TATGAAATCC AAACTTCTAA TGATAATGAA AATTGGAAAA CAGTTCATAG AAACGAAGCT
GGAAAAGGTG GCACTGAGGT TATAGAATTA AGTGAAAAAG AAAATGCAAG GTATGTAAGA
GTTTATTGTG AAGAAAATAA TCCAGCAGTA TGGAATGCAG TATCTTTATA TGAAGTAGAG
ATATATAATG GAGAGATTCC TTCATCTGGT GATTTAGATG AAGTTTTAAA CTCATTAGAA
GTTCCTACTA TAAATAAGGG GGACTCTAAA CTTCAAATGC CAGAGGTTCC AAAAGGGTTT
GAGATAAAAT TTATTGGGGC AGATTATAAT CAAATAATAA ATGATGATAT GACCATAAAT
GAACCTTTAG TAGATACAAA GGTAGTTGTG GATTTTGAAA TAAAAAAAGG CAGTCTAAAA
AGAGAAACTA CTGGTATTGA AATAACTGTA CCTGGTAAAT ATTCTGGTTC TTTAGGAAGT
AATACTAAGC CAGAAGTAGT TCCAAGTTTA AGAGAATGGG TTGGAAAAGA TGGAAACTTT
ACTATAAGAG ATTCTTCAAG AATAGTTATT GATCCTACCT ATGAAAATGA ACTAAGCAAA
ACTGCAAGTG AATTTAAATC TGATTATGAG GAGATAGTTG GTAAACCAAT GGAAATAGTT
TACTCAAGTT CACCTGTAGA AGGAGATTTT TATTTTACTT TAAATTGTGA AGATAAGAGT
ATTGGAGAAG AAGGATATTA CATGTATGTA GATGAGTATG TAAAGGTTGA AGCTACTCAT
AATACAGGAG CTTTCTACTC AACTAGATCA ATACTTCAAA TATTAAAGCA AAATGGAGAA
ACTATTCAGA AAGGAATAGT TAGAGATTTC CCAAGATATG AAAATAGAGG ATTTATGCTT
GATGCAGGAA GAAAATTCTT TACAATGGAT TATTTAGAGC AGTTTATGGA AGTTATGTCT
TGGTACAAAT TAAATAACTT CCAAGTTCAT TTAAGTGATA ACTATATTTG GACTAATAAT
GAGAATTGGG AAACTGCTTA TGCTGCTTTT AGATTAGAAT CTGACACATA TCCAGGTTTA
ACAGCAACAG ATGGAAGTTA TACTAAAGAA GAGTTTAGAG AATTTATAGA AAAGTCTGGG
GATCATGGAG TAGAAATTAT TCCAGAAATA GATGTTCCTG CTCACTCCTT AGCATTTACT
CGCTATGATC AATCTTTAGC CTTAGGTACA GGAGGAGATG CAACTTATTT AGATGTAGGT
AATCCAAAGG TTTATGATTT TGTAGATGGA TTATTTGATG AATATTTAGG AGGAGAAAAT
CCAGTCTTTG GAGATCAAGA TTTCCATATT GGAACAGATG AGTATAAGGG AGCACCAGAG
AAAAAAGAAG AATTTAGAGC ATTTACAGAT AGATATCTTA AAAAAGTAAG AGATGATTAT
GGTAGAAATC CAAGACTATG GGGAAGTTTA GATGTTTTCC CAGGACAAAC TCCTGTAACT
AGCGATGGAG TCCTTATGAA TATATGGTAT AGGGGATATG CTGATGCTAG AAATATGATA
AATCAAGGAT ATGATATTTT AAATACACAG GATGCAGATC TTTATATAGT TCCAGAAGCA
GGTTACTATA ATAACTATCT TAACACAAGA TTTTTATATA ATGAGTGGGA ACCAAGAAGA
TTTGCTTCAG ATTACAAACT TCCAGCGGGA CATCCTCAAT TAAAGGGAGG AATGTTTGCT
GTATGGAATG ATATGATAGA TGAAAAAGCA AATGGAATTT CTGAAAGAGA CATCTATGAT
AGATCATTCC AAGCTGCTCA AGTTTTATCA GAAAAAATGT GGGCGGCACC TGATAGTGAA
ACAAGTTTTG AAGAATTTAA AGAAAGAGTT GACAAAGTAA GTGATGTTCC AGATTCTAAC
TTAACTTATG ATGTGGAATC TAAAACTGAA ACTGTAATTG ATTATGATTT TGAAGAAGAT
TCTACAGAAA ATATTAAAGA TAATTCTGGA AATGAATATA ATGCTACAGG AGTAAATGTA
GAATCTGTAG AAGGTAAAGA AGGAAAAGGA ATTAAATTAA GTGGAGGAGA AAGCTATATT
GATACTCCAA TTGATAACAA AGGTTTAGAC TATACGGTTT CTATGTGGGT GAAGAAAGAT
GCAAATGGAG ATTATAGTGA GCAAATATTA TCAGAATCTA ACACAGGGGT ATTAAAGGCT
TGTCAAAAAG AAACTGGTAA TGTTGGTTTC TCAAGAGAAG GATATGACTA TTCATTTAAT
TATAAATTAC CTGAGGATGA ATGGGTAGAG TTAACATTTA TTGGAGAATT AAATAAAACA
AGTCTTTATG TAAATGGAGA ATTTATAGAA ACTATAAATA AGAGTAATGG TGGTAAGGTA
GGAACATTTA TTTTACCTTT AGATAAAATA GGAAGTTCAA CTAATTCCTT TAAGGGTAGC
ATAGATGAAA TTACTATTAA GGATGGGGCT CATAAAATTG TAGATCCTAC AGTTATACCT
CAAGAGCAAA TGAGTGCAAC TGCTAGCAGT GAGCATCCTA ATATAGGATC AGAGGGAATA
GCTGATTTTG CTATAGATGG AGATGAAAGT ACTATATGGC ATACTAAGTG GAGTCCTGTA
GAAGCATTAC CTCAACACAT TACTTTAGAC TTAGGTGGAA GTTATAATAT AAATAAATTT
ACTCATATGC CAAGACAGGA TGCCTTAAAT GGTAGCATAA GTAAATATGA ATTCCAAGTT
AGTACTGATG GAGAAAACTT TACAAAGGTT TTAGAGGGAG ATTGGACTGC TGACCATAGT
ACTAAGGTAT TAAAATTTGA TCCAGTAGAA GCTACTCATG TAAGATTAGT GGCTAAAGCT
GGTCATGGTG GATTTGCCTC AGCTGCTGAA TTAAATGTTC ATCAAGTTTT AGAAGTTCCA
CAAGAGAATG TGGGACAAAG TTTCTTAACT TTACCAGAAA GCCTTAAAGT AAATGAAAAT
TTTGATGTTT TCTTAGGTGC TAACGAAATA AAAGAAGATT TATCAGCTTA TGCAGCAGAA
TTTACTTTAA AATATAATCA AGAAGTATTT GACTTAGTTG AAGTTGCAAG TGGAATAGAT
GGAGTTTTGG TAAATTATAA AGAAGTAGAA CCAGGCGTAG TAAAAATATT AGTTGCTAGT
TTAGAAAAAA CTATAGAAAA TGATACAAAC TTAGTAAAGG TAACTCTTAC TCCTAAGAGT
GAATCAGAAA GAGAAATTTT TGAAGTAATT TCAGCAAACT TAGGTGATGG AGAAAATGGA
AAAGTTTGTG AATTAGGATT AACAAGTGGA GAGGTAGCAG TAGGCAAAGG TAGTGTAGAT
ATAATTGTTA ACCCAGTAGA AAACTTTGTG GCTTCAGAGA TTAGTAGAAA ATATGTAAAT
GTAACTTGGG AAGCTCCAAA GACAACTGAA GGTTTAGAAG GATATATTTT ATATAAAGAT
GGTAAAAAGG TTGGAGAAGT TGGTGCTGAT GAGACAACTT ATAAATTTAA AGGCTTAAAT
AGACACACAA TTTACAACTT TAAAATAGCT GCTAAGTATT CAAATGGAGA AATTTCTAGT
AAGAAGTCAA TAACTTTAAG AACAAGCAGA AATTAG
 
Protein sequence
MKRLIACGIA ASIVSVNGLS VLASELNKSD KVNLALNKKT VASSREVNDK WGAELITDGI 
KDKPSDPNAK PGNSRWASSR SVPQWIYIDF EEATTFDQVD ILWDGAYSRN YKLEVSNDGE
TWEEVYATSE GKGNQESINL GEDITANYLR VSCEDTAHEW GNVSIYEVEV YDNENEENVT
PPETEIGVNI ALNKTATASA SETNTLTPDK VVDGDTSSRN SRWSSGGFSN GAKQWITIDL
EKESTFDKVR LFWEAANAKV YEIQTSNDNE NWKTVHRNEA GKGGTEVIEL SEKENARYVR
VYCEENNPAV WNAVSLYEVE IYNGEIPSSG DLDEVLNSLE VPTINKGDSK LQMPEVPKGF
EIKFIGADYN QIINDDMTIN EPLVDTKVVV DFEIKKGSLK RETTGIEITV PGKYSGSLGS
NTKPEVVPSL REWVGKDGNF TIRDSSRIVI DPTYENELSK TASEFKSDYE EIVGKPMEIV
YSSSPVEGDF YFTLNCEDKS IGEEGYYMYV DEYVKVEATH NTGAFYSTRS ILQILKQNGE
TIQKGIVRDF PRYENRGFML DAGRKFFTMD YLEQFMEVMS WYKLNNFQVH LSDNYIWTNN
ENWETAYAAF RLESDTYPGL TATDGSYTKE EFREFIEKSG DHGVEIIPEI DVPAHSLAFT
RYDQSLALGT GGDATYLDVG NPKVYDFVDG LFDEYLGGEN PVFGDQDFHI GTDEYKGAPE
KKEEFRAFTD RYLKKVRDDY GRNPRLWGSL DVFPGQTPVT SDGVLMNIWY RGYADARNMI
NQGYDILNTQ DADLYIVPEA GYYNNYLNTR FLYNEWEPRR FASDYKLPAG HPQLKGGMFA
VWNDMIDEKA NGISERDIYD RSFQAAQVLS EKMWAAPDSE TSFEEFKERV DKVSDVPDSN
LTYDVESKTE TVIDYDFEED STENIKDNSG NEYNATGVNV ESVEGKEGKG IKLSGGESYI
DTPIDNKGLD YTVSMWVKKD ANGDYSEQIL SESNTGVLKA CQKETGNVGF SREGYDYSFN
YKLPEDEWVE LTFIGELNKT SLYVNGEFIE TINKSNGGKV GTFILPLDKI GSSTNSFKGS
IDEITIKDGA HKIVDPTVIP QEQMSATASS EHPNIGSEGI ADFAIDGDES TIWHTKWSPV
EALPQHITLD LGGSYNINKF THMPRQDALN GSISKYEFQV STDGENFTKV LEGDWTADHS
TKVLKFDPVE ATHVRLVAKA GHGGFASAAE LNVHQVLEVP QENVGQSFLT LPESLKVNEN
FDVFLGANEI KEDLSAYAAE FTLKYNQEVF DLVEVASGID GVLVNYKEVE PGVVKILVAS
LEKTIENDTN LVKVTLTPKS ESEREIFEVI SANLGDGENG KVCELGLTSG EVAVGKGSVD
IIVNPVENFV ASEISRKYVN VTWEAPKTTE GLEGYILYKD GKKVGEVGAD ETTYKFKGLN
RHTIYNFKIA AKYSNGEISS KKSITLRTSR N