| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1502 |
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| Symbol | rnr |
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| ID | 4202762 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 1713602 |
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| End bp | 1715857 |
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| Gene Length | 2256 bp |
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| Protein Length | 751 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 638082380 |
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| Product | ribonuclease R |
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| Protein accession | YP_695945 |
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| Protein GI | 110800238 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.211368 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATAA AAGATATAAT TTTAGGGTTT ATGAAAGAAG AAGCATACAG ACCAATGACA
ATGTTAGAAT TATCAAAGAT ATTTAACATA AATAAAGCTG AATATAAACA ATTTAAAAAA
GTCTTTAAGG CATTAGAGGC AGAGGGATTA ATAGCTAGAG ATGAGGAAGA TAGATTTGGC
TTAATAGATA AAGTGGGTTT AATACCTGGA AAAATTCAAA TACATCAAAA GGGATTTGGT
TTCTTAATAC CAGATGAAGA AGGTGTAACT GATGTATTTA TACCTAAGAA TGCTTTAAAT
GGGGCTATGA ACGGAGATAG AGTATTAGGT AAGGTTGTAA AAGAAAGCCA AGAAGGAAAA
AGACGTGAAG GTGAAATAGT AAGAATAACT GAGAGAGTTA ACACAAAGGT AATAGGAATA
TATGAGGATA ATAAGAGTTT TGGATTTGTA CTTCCACAGG ATCAAAGAAT TCAAAATGAT
ATATTCATAT CTAAGAAGGA TAGAAATGGA GCTAAAAAAG GTAATGTAGT TGTTGTTGAA
ATAACTAAGT GGCCAGATGG TAGAAGAAAG AATCCAGAAG GAGTAGTAGT AGAAATACTA
GGAAACAGAG GAGATTTAGG TTTAGATATT ATAACTGTAA TTAAGAAATA TGCTCTTCCA
GAAGAATTCC CTCCACAAGT TTTAGCCTTT GCAGAAGAAA TTTCAGAGGA AATCCCAGAG
TCAGAAATTA AGAGAAGAAC AGATTTAAGA GATGTAAAAA TGGTTACTAT AGATGGTGAA
GATGCTAAGG ATTTAGATGA TGCTGTATCT ATAGAAAGAC TTCCAAATGG AAACTATAAA
TTAGGAGTTC ATATTGCAGA TGTAACTCAC TATGTAAAAG AAAATAATCC TTTAGATAAA
GAGGCCTTTA AGAGAGCTAC TTCTGTTTAC TTAGTTGATA GAGTTATTCC TATGCTTCCT
AAAAAGTTAT CAAATGGAAT ATGTTCATTA AATCCACAGG TAGACAGACT TGCTTTAACT
TGCTTTATGG AAATAGATCA TAAAGGAAAT GTGGTTAACC ATTCAATACA TGAAAGTGTA
ATTAAAACTA ATGAGAGAAT GACATACACT GATGTAACTA AGATTTTAAG AGATAATGAC
AAAGAGTTAA TTGAAAGATA TAAAGATTTA GTAGATGATT TTAAGGCTAT GGAAGAGTTA
TGTAAAATCT TGAATAAGAG AAGAATGGGA AGAGGAGCTA TTGACTTTGA ATTTGCAGAG
AGCAAAATAA TCTTAGATGA AAAAGGAAAG CCAATAGATA TAAAACCATA TGAAAGAGCT
ATAGCAAACA GAATCATAGA AGAATTTATG TTAGTATGTA ATGAAACTAT AGCAGAATAT
ATGAATAAGG CTGAAATACC TTTTGTATAT AGAATACATG AGGAGCCAGA TAATGAAAAA
CTTCAAAGAT TTAAAAACTT TGCATATAGC TTAGGATATT CATTTAATTT TGGAGAACTT
ATTGAGCCTA GAGATTTACA AAAGGTTGTT GAAGAAGTTA AGGGCAAAAA TGAAGAGATG
GTAATAAACA CATTACTTTT AAGAAGTATG ATGCAAGCTA GATATTCTCC AGACTGTGCA
GGTCACTTTG GATTAGCAGC TGAATACTAT TGTCACTTTA CTTCACCAAT TAGAAGATAT
CCAGACTTAC AAATTCATAG AATAATAAAA GAATATATAA ATAAGAAGAT TGATCCTAAG
AGAGCTAAGA GACTTTTAAG TATTGTTGAC TCTGCATCTA AGCAATCTTC AGAAATGGAA
AGAATAGCTC AAGAAGCTGA AAGAGAAACA AATGATCTTA AGAAGGCTGA ATATATGAAA
GATAGAATTG GAGAAATATT TGATGGTATT ATTTCTTCAG TTACTGGATT TGGAGCCTTT
GTTGAACTTC CAAATACTGT AGAAGGTCTT GTTCATGTAA CAAGCTTTAG AGATGATTAT
TACATCTATG ATGAGGAAAA CCTTCAATTA ATAGGTGAAA GAACTAAGAA GGTTTATAAA
CTTGGAGAAA AGGTTAAGGT TCTTTGCTCA AGAGTAGAAA TGGATACTAG AGAAGTTTAT
TTTGAAATAG TTGAGGATAA GTACACTATT GAGGAAAAGG AAGCTGAAAC TGAAGAGAGA
GAGAATTTAC TTGATGAAGT AAAAAAAGAG CTTGAAGCAG AGGGAAAGGT TGAAATAATA
GAACCAAGAG AAGAAACTGC TGAGGAAGAG CTTTAA
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| Protein sequence | MKIKDIILGF MKEEAYRPMT MLELSKIFNI NKAEYKQFKK VFKALEAEGL IARDEEDRFG
LIDKVGLIPG KIQIHQKGFG FLIPDEEGVT DVFIPKNALN GAMNGDRVLG KVVKESQEGK
RREGEIVRIT ERVNTKVIGI YEDNKSFGFV LPQDQRIQND IFISKKDRNG AKKGNVVVVE
ITKWPDGRRK NPEGVVVEIL GNRGDLGLDI ITVIKKYALP EEFPPQVLAF AEEISEEIPE
SEIKRRTDLR DVKMVTIDGE DAKDLDDAVS IERLPNGNYK LGVHIADVTH YVKENNPLDK
EAFKRATSVY LVDRVIPMLP KKLSNGICSL NPQVDRLALT CFMEIDHKGN VVNHSIHESV
IKTNERMTYT DVTKILRDND KELIERYKDL VDDFKAMEEL CKILNKRRMG RGAIDFEFAE
SKIILDEKGK PIDIKPYERA IANRIIEEFM LVCNETIAEY MNKAEIPFVY RIHEEPDNEK
LQRFKNFAYS LGYSFNFGEL IEPRDLQKVV EEVKGKNEEM VINTLLLRSM MQARYSPDCA
GHFGLAAEYY CHFTSPIRRY PDLQIHRIIK EYINKKIDPK RAKRLLSIVD SASKQSSEME
RIAQEAERET NDLKKAEYMK DRIGEIFDGI ISSVTGFGAF VELPNTVEGL VHVTSFRDDY
YIYDEENLQL IGERTKKVYK LGEKVKVLCS RVEMDTREVY FEIVEDKYTI EEKEAETEER
ENLLDEVKKE LEAEGKVEII EPREETAEEE L
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