Gene CPF_1448 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1448 
Symbol 
ID4203690 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp1631495 
End bp1632943 
Gene Length1449 bp 
Protein Length482 aa 
Translation table11 
GC content30% 
IMG OID638082326 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_695891 
Protein GI110799812 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.307254 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAATAATG CTAATGAAAA CTCTAAAAAC ACTGAAGATT TAGTTTATAA AAACAGATGG 
TTTATATTAG CAGTATTAGT AATGCAACCA TTCATGGCAT GTTTAGACAG TAGCATAGTT
AATGTAGCCC TTCCAATTCT TCAAAAAGAA CTTGGTGCAA CTATGGCTGG AACTGAATGG
ATTGTAAGTT CATATTTAAT AATAATTTCT GCATCAATTT TAATCTTTGG TAGATTAGGA
GATATGCATT CAAAAAGTTC AGTATTTATA AAAGGGATTT TAATATTTGT TCTTGGATCT
TTCCTTTGCG GAATATCCCC ATCACTTCCT ATTCTAGTAT TATCTAGAGT TGTGCAAGCT
ATTGGTGCCG CTATGTTAAT GTCCACTAAC CAAGGTATTA TAACAGATGT TTTCCCTCCT
AAGGAAAGAG GAAAAGCTTT AGGTATCTCT GGTTCCTTTG TTGCCTTAGG TTCTATATTA
GGTCCAGCAT TAGGTGGATT CATAGTTACA TATTTCACTT GGCACTATAT TTTCTTAATA
AATGTACCTA TAGGTATAAT TTGCTACATA TTCGCTAAAA AATATCTACC AATAAGAATT
CCTAAGGAAT CTGAGTCAAT GGATAAGCCT GGAGCAACAA TGTTTTTCAT TGCTACAATT
CTTATATTTA CATCAATATT AATTAGCCAA CATTTAGGCT TTACTAGCAT ATATGTAATC
CTAGGATTAA TAATTGGACT TATTATTCTT GCTTTATTCT TAATCTATGA AAACAAGATA
AAGAATCCTA TGCTTCATTT AAGCTTATTT AAAAAGCCAA TATTCTCAGT AAGCTTAATA
TGTGCATTTA TTTCCTTTAC TGCAATAAAT ACAATTAATG TTATTCAACC CTTTTACTTA
AATGACATTT TAGGCTATAG TCCTGGAAAA ATTTCAGTTA TAATGACAGC TTATCCAATT
GTATTATTTG TTATTGCACC ACTTAGTGGA ACATTATCAG ATAAAATAGG AAGTAAAATA
CTTACTTTAA TAGGATTATT CTTAACAGGA GTTTCAATGA TTTTATTATC ATCATTAAAT
AGTAACTCAA GTGAAACATC CATATTCCTT ATGTTATCTT TATTAGGTTT TTCAAATGGA
TTATTCCAAT CTCCAAATAC AAACCTTATA ATGTCCTCTG TTCCTAAGGA TAAGCTTGGA
ATAGCAGGAG GTACTAATGC CTTAATAAGG AATTTAGGTC TTGCCTTTGG AGTATCAGCT
TCAACCTCTA TTTTATATGC AAAAATGAGT AAGTTAGCTG GATTTAGAGT TTTAGGATCT
GTTCCTAATA GACCTGATAT ATTTATTTCT GGAATGAGAT TTGTATATAT TTTAGTTGCT
ATTTCATGTT TTATATGCCT TATAATTTCT ATAGCTGAAT ATATTCAATC TAAAAAAAAT
AACAAATAA
 
Protein sequence
MNNANENSKN TEDLVYKNRW FILAVLVMQP FMACLDSSIV NVALPILQKE LGATMAGTEW 
IVSSYLIIIS ASILIFGRLG DMHSKSSVFI KGILIFVLGS FLCGISPSLP ILVLSRVVQA
IGAAMLMSTN QGIITDVFPP KERGKALGIS GSFVALGSIL GPALGGFIVT YFTWHYIFLI
NVPIGIICYI FAKKYLPIRI PKESESMDKP GATMFFIATI LIFTSILISQ HLGFTSIYVI
LGLIIGLIIL ALFLIYENKI KNPMLHLSLF KKPIFSVSLI CAFISFTAIN TINVIQPFYL
NDILGYSPGK ISVIMTAYPI VLFVIAPLSG TLSDKIGSKI LTLIGLFLTG VSMILLSSLN
SNSSETSIFL MLSLLGFSNG LFQSPNTNLI MSSVPKDKLG IAGGTNALIR NLGLAFGVSA
STSILYAKMS KLAGFRVLGS VPNRPDIFIS GMRFVYILVA ISCFICLIIS IAEYIQSKKN
NK