Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1403 |
Symbol | |
ID | 4201978 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 1576487 |
End bp | 1577164 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 28% |
IMG OID | 638082283 |
Product | DNA-binding response regulator |
Protein accession | YP_695848 |
Protein GI | 110800369 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000398651 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATATTT TAATAGCTGA GGATGAACAA GATATAAGAA ATCTTTTAGA ATTGCATTTA TTAAAGGAAG GATACACTGT ATTTAAGGCT GTAAATGGAT TAGAAGCCTT AGATATCTTA AAAAAAGAAC ATATACATTT AGCCTTATTA GATGTTATGA TGGATGGAAT AGATGGCTTT AATCTATTAA AGATGTTAAG GGAATGGAGT CAGATTCCAG TTATATTTTT AACTGCTAAA ATTGAGGATG ATGATAAAAT ATTAGGTTTA GGCTTAGGGG CTGATGATTA TGTTATAAAA CCTTTTAAAC CTGTAGAACT TATGGCTAGG ATTAAATCAA ATTTAAGAAG GTGTTATAAA TATTCTGGAG AAAATGAACT TATAAAAATA GGAAATTTAG AACTTAGTAA AGAAGGATGT ACAGTTAAAA AAGATGGAGA AATAGTAACT TTAAACGCAA AGGAATTTAA AATTTTAGAA ATGCTTATGA GCAACATTGG AAGAGTGTTT ACTAAAAAAC AAATATATGA AAATGTATGG CAAGAGGAAT ATTTAGGTGA TGACAATACT ATAATGGTTC ATATAAGCCA CTTAAGAGAT AAGATAGAGG AAGATCCTAA AAATCCTTGC AAGATAAAAA CTATAAGAGG GATAGGATAT AGGTTTGAAA AAATTTAA
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Protein sequence | MNILIAEDEQ DIRNLLELHL LKEGYTVFKA VNGLEALDIL KKEHIHLALL DVMMDGIDGF NLLKMLREWS QIPVIFLTAK IEDDDKILGL GLGADDYVIK PFKPVELMAR IKSNLRRCYK YSGENELIKI GNLELSKEGC TVKKDGEIVT LNAKEFKILE MLMSNIGRVF TKKQIYENVW QEEYLGDDNT IMVHISHLRD KIEEDPKNPC KIKTIRGIGY RFEKI
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