Gene CPF_1400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1400 
Symbol 
ID4201998 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp1572642 
End bp1574138 
Gene Length1497 bp 
Protein Length498 aa 
Translation table11 
GC content31% 
IMG OID638082280 
Productamino acid permease family protein 
Protein accessionYP_695845 
Protein GI110800640 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0531] Amino acid transporters 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00116878 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCTCAG AACATAAAAG TAAATTGTCT TTAACAGCGC TTATATTAAT GATTTTCACA 
TCAGTATATG GTTTTGCTAA CATGCCAAAG GCCTTTTATT TAATGGGATA TAGTGCTATT
CCATGGTACA TAATATCAGC ATTAGCTTTC TCAATTCCAT ATGCTTTTAT GATGGCAGAA
TATGGAGCAG CATTTAGAAA GGAAAGAGGG GGAATATACT CATGGATGGC TAAATCTGTA
GGACCTAAAT ATGCCTTCAT AGTTACGTTC ATGTGGTATT CATCAAATTT AATATGGTTA
GTTAGTAACT CATCATCAAT ATGGATTCCT TTCTCAAATG TTATATATGG AAAAGATACT
ACAGGAACAT GGTCTTTACT TGGATTAAGT GTTCCACAGA CAATGGCTGT ATTAGGATCA
ATACTTATAA TAGTTATAAC TTATGCAGCA TCTAAAGGAT TAAAGAGTAT AACAAAGGTT
ACTTCAATTG GAGGAACTGT TGTTGCATTA TCAAATATAG TACTTATTTT AGGAGCAATT
ATTGTTTTTG TAAGCAATGG ATTTAAACCA GCTGAGGTAA TAAATGGGTC TGCCTTTGTT
CATGCACAAA ATCCATCTTA CCAATCACCA ATAGGTGTAT TAGGATTTTT AGTTTTTGCA
GTTTTTGCTT ATGGTGGACT AGAAGCTGTA AGTGGATTAG TTGATGAAAC TAAGGATGCT
AAAAAGAATT TTCCAAAGGG ATTAATGATT GCATCTATAA TAATAGCCGT TGGATATGCT
GTTGGAATAC TTTGTGTTGG ATTATTTACA AATTGGCAAG AAGTATTATC AGGGGATAAT
GTTAACTTAG CAAATGTAGC ATATATAGTA ATTCAAAACT TAGGTGTAAA ATTAGGTCAA
GCTTTTGGCA TGAGTACTAA TGCTTCACTT CAATTAGGAG CTTGGTTTGC AAGATACATA
GGTCTTTCAA TGATGTTAGC CTTAATGGGA GCTTTCTTTA CATTAAGTTA TGCACCTATT
AAACAATTAA TAGAAGGAAC ACCTAAAGAA ATCTGGCCAA AAAAATGGAC TGTGTTAAAT
GAAAATAACA TGCCAGTTAA TGCAATGTGG GTTCAATGTA TAGTTGTTGT TATATTTATA
TTAGTAGCTT CTTTTGGTGG AGAATCTGCA AATAAATTCT TTAGTTATTT AATATTAATG
GGTAATGTGG CCATGACAAT ACCATATATG TTCTTATCTG GAGCTTTCCC AGCATTTAAA
AAGAAAAAAC ATATAGAAAA ACCATTTGTT ATGTATAAGT CATATAAATC ATCATTAATT
TGGTCAATAA TAGTAACATT TACAATTGGA TTTGCAAATT TATTTACAAT AATAAAACCT
GTTATTCAGG ATAAAGATTA TACAGCTATG GCATTCCAAA TAACTGGTCC AATAGTTTTT
TCTATAATTG CTTTTATACT TTATCATAAT TATGAAAAGA AAATGAAAAA TAAATAA
 
Protein sequence
MSSEHKSKLS LTALILMIFT SVYGFANMPK AFYLMGYSAI PWYIISALAF SIPYAFMMAE 
YGAAFRKERG GIYSWMAKSV GPKYAFIVTF MWYSSNLIWL VSNSSSIWIP FSNVIYGKDT
TGTWSLLGLS VPQTMAVLGS ILIIVITYAA SKGLKSITKV TSIGGTVVAL SNIVLILGAI
IVFVSNGFKP AEVINGSAFV HAQNPSYQSP IGVLGFLVFA VFAYGGLEAV SGLVDETKDA
KKNFPKGLMI ASIIIAVGYA VGILCVGLFT NWQEVLSGDN VNLANVAYIV IQNLGVKLGQ
AFGMSTNASL QLGAWFARYI GLSMMLALMG AFFTLSYAPI KQLIEGTPKE IWPKKWTVLN
ENNMPVNAMW VQCIVVVIFI LVASFGGESA NKFFSYLILM GNVAMTIPYM FLSGAFPAFK
KKKHIEKPFV MYKSYKSSLI WSIIVTFTIG FANLFTIIKP VIQDKDYTAM AFQITGPIVF
SIIAFILYHN YEKKMKNK