| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1398 |
|---|
| Symbol | |
|---|
| ID | 4201870 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 1571291 |
|---|
| End bp | 1572067 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 25% |
|---|
| IMG OID | 638082278 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_695843 |
|---|
| Protein GI | 110799010 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4905] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000163378 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAACA TTATATATAA TATTTTGTAT ATAATAATAT ATAGCTTTTT AGGATGGTGC
TGTGAAGTTA TATATTGTTA TATAATAGAT CACAAGTTTA CAAATAGAGG CTTTTTAAAT
GGGCCATTAT GCCCTGTATA CGGATTTGGA GCTTTTTTTG TTTTAACATT TTTAGATATG
TATAAAAGTA ATATAATATT AGTATTTATA TTAGGAATAA TAATTACATC AGTTTTAGAG
TATATTACCT CTTTTTTATT AGAAGCAATA TTCCATACTA AGTGGTGGGA TTATTCAAAA
CACAAGTTTA ATATTCATGG AAGAGTGTGC TTACTTAATT CCACACTATT TGGTATATTA
TCAGTTATAT TAGTTGAGTT TATAAATCCT ATTATAGTTG ATTTTGTTAG TAAATTTCCA
GAAAAGATAG TTTTTATTGT AACAATAATT TTAGCAGCTC TAATTGTTAT TGATTTTGTA
GTAACAGTAC AAGCTATGAT TAAGTTAAAT TCAAAATTAC ACAATCTTCA AGATTTATCT
AAGGAGTTTG AGGAGTTTGG AATTTCCTTT ATAGATAAGA CCGAGAAAGA ATTAGAACTT
ACTATGAACA AATTTAAGCG TGAGGCTAAT TTAAAAGAAG AAATGTTAAA TAGAGCTAAA
TCTCTAAGAA GAAATAATAT TCTTCAAAGA AGACTTTTAA AAGCATTCCC TAATATGAAA
CATAAGAGAT ACAATGAATT ACTACAAAAA TTAAGAAAAG AAGATAAGCT TAAATAG
|
|---|
| Protein sequence | MENIIYNILY IIIYSFLGWC CEVIYCYIID HKFTNRGFLN GPLCPVYGFG AFFVLTFLDM
YKSNIILVFI LGIIITSVLE YITSFLLEAI FHTKWWDYSK HKFNIHGRVC LLNSTLFGIL
SVILVEFINP IIVDFVSKFP EKIVFIVTII LAALIVIDFV VTVQAMIKLN SKLHNLQDLS
KEFEEFGISF IDKTEKELEL TMNKFKREAN LKEEMLNRAK SLRRNNILQR RLLKAFPNMK
HKRYNELLQK LRKEDKLK
|
|---|
| |