| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1387 |
|---|
| Symbol | pyrB |
|---|
| ID | 4202689 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 1559980 |
|---|
| End bp | 1560903 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 638082267 |
|---|
| Product | aspartate carbamoyltransferase catalytic subunit |
|---|
| Protein accession | YP_695832 |
|---|
| Protein GI | 110799591 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0540] Aspartate carbamoyltransferase, catalytic chain |
|---|
| TIGRFAM ID | [TIGR00670] aspartate carbamoyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAAAA ACAAACACTT ATTAGATCCA TCAGATTTCA CAATAGAGGA ATTTGATGAA
ATTTTCAAAT TAGCACATCA AATTATGGCA AATCCAAAAG AATATCAAAA CATATGCAAT
GGTAAAATTC TAGCAACACT TTTCTATGAG CCAAGCACTA GAACAAGATT GTCTTTTGAA
TCAGCAATGC TTAGACTAGG TGGACAAGTT ATAGGTTTCT CAGAACCAAA TTCTTCATCA
GTTTCTAAAG GAGAATCTTT AAGAGATACT ATTAAAACAG TAAACTGCTA TGCAGATCTT
ATAGCAATGA GACATCCTTT AGAAGGAGCA GCAAAAGTTG CTTCAATGTA TTCAGATATC
CCAGTTATAA ATGCAGGAGA TGGAGGTCAT CAACATCCAA CTCAAACATT AACAGATCTT
CTTACAATAA AAGAATATAA AGGAAACCTA GAAGGAAATA CAATTGCATT ATGTGGAGAC
TTAAAATTCG GTAGAACAGT GCATTCTCTT ATAAAAGCAC TTTCAAGATA TAAAAATAAT
AAATTCATCT TAATATCTCC AATAGAACTA AGAATTCCCA ATTATATTAG AGAGCAAATT
TTAGAAAAAA ATAATATAGA ATACAAAGAA ATTACTAGTT TAGAAGAAGG AATTAAGGAA
GCTGATATTT TATACATGAC AAGAATACAA AGAGAAAGAT TTGTAGATCA AAGTGAGTAT
GAAAGATTAA AAGATGTATA TGTATTAGAT GAAGCAAAAA TGAAGGGTGC CAAAGAAGAT
ATGATGGTTC TTCATCCTCT TCCAAGAGTA AATGAAATAG CCTATGAAGT AGATGAAGAT
TCAAGAGCAT TTTACTTTAA GCAAGCCAAA TGCGGAATGT ATGTAAGAAT GGCCTTAATG
GCAAAACTTT TAGGGGAGGC GTAA
|
|---|
| Protein sequence | MLKNKHLLDP SDFTIEEFDE IFKLAHQIMA NPKEYQNICN GKILATLFYE PSTRTRLSFE
SAMLRLGGQV IGFSEPNSSS VSKGESLRDT IKTVNCYADL IAMRHPLEGA AKVASMYSDI
PVINAGDGGH QHPTQTLTDL LTIKEYKGNL EGNTIALCGD LKFGRTVHSL IKALSRYKNN
KFILISPIEL RIPNYIREQI LEKNNIEYKE ITSLEEGIKE ADILYMTRIQ RERFVDQSEY
ERLKDVYVLD EAKMKGAKED MMVLHPLPRV NEIAYEVDED SRAFYFKQAK CGMYVRMALM
AKLLGEA
|
|---|
| |