| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1375 |
|---|
| Symbol | |
|---|
| ID | 4203215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 1551763 |
|---|
| End bp | 1552497 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 27% |
|---|
| IMG OID | 638082256 |
|---|
| Product | haloacid dehalogenase, IB family protein |
|---|
| Protein accession | YP_695821 |
|---|
| Protein GI | 110799920 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0560] Phosphoserine phosphatase |
|---|
| TIGRFAM ID | [TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like
[TIGR01490] HAD-superfamily subfamily IB hydrolase, TIGR01490 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0035145 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAAA AAAACATAGC AGCATTTTTT GATATTGATG GAACAATATA TAGAGAAGGA
TTAATAACAG AAGTATTTAA AAAAATAATA AAATACGAAT TAGTTGATGA AACTAAGTGG
TATAAGGATG TACGTCCATC ATTCATAAAA TGGGATAAAA GACAAGGTGG TTATGATGAA
TATTTACTAA AAATGGTTGA TATATATACT GAAGCAATAA GAGGAATAAG CAATCATCAT
ATAGAGTATA TAGCTAAGAA AGTAATAGAA CAAAAAGGGG ATAGGGTTTA TACATTTACT
AGAGAAAGAA TTAAATGGCA TAAAGAACAA GGTCATATTG TCATAGCTAT TTCTGGATCT
CCTTATGAGC TTGTAAAAGA AATGTCAGAA AAATATAATA TGAATGATTT TAAAGGAACT
ATATATAAGC TTGATCATAA CAATACATAT AACGGAGATA TAATTCCAAT GTGGGATTCT
GAAAGCAAAG AAAAAGCTAT CTTAGAATTA AAAGAAAAAC ATAATATAGA CTTAGAAAAT
AGTTATGCTT ATGGAGATAC CTCTGGAGAT TTTACAATGT TTAAAAATGT TGGAATACCA
TATGCAATTA ATCCAACAAG AGAGCTTATC ACTAAAGTTC TTCAATGTGA TGAAATTAAG
GAGAAAATTA AAGTAATAGT TGAAAGAAAA GATGTTACTT ATGATTTAGA TATAAATAAC
TTAAAACTTC TTTAG
|
|---|
| Protein sequence | MKEKNIAAFF DIDGTIYREG LITEVFKKII KYELVDETKW YKDVRPSFIK WDKRQGGYDE
YLLKMVDIYT EAIRGISNHH IEYIAKKVIE QKGDRVYTFT RERIKWHKEQ GHIVIAISGS
PYELVKEMSE KYNMNDFKGT IYKLDHNNTY NGDIIPMWDS ESKEKAILEL KEKHNIDLEN
SYAYGDTSGD FTMFKNVGIP YAINPTRELI TKVLQCDEIK EKIKVIVERK DVTYDLDINN
LKLL
|
|---|
| |