| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1336 |
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| Symbol | rluB |
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| ID | 4201745 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | + |
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| Start bp | 1511257 |
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| End bp | 1511967 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 638082217 |
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| Product | ribosomal small subunit pseudouridine synthase B |
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| Protein accession | YP_695782 |
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| Protein GI | 110801071 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.014485 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAAGAAA GATTGCAAAA ATACATGGCA AGGTGTGGAG TAGCATCAAG AAGAAAATGT
GAAGAAATAA TTTGCAGTGG AAAAGTAAAG GTTAATGACA TTGTTGTTGA CTCCCTTGGG
ACTAAGGTTG ATCCATCAGT AGATGTTGTT AGCGTTAATA ATAAAGTAAT ACGTCCTGAG
GAAAATAAAG TATATATAAT GTTAAATAAG CCTGAAGGAT ATGTTACAAC AAATAAAGAT
GAAAAAAATA GAAAGACCAT ATTAGATATA GTAAAGGTGA ATGAAAGAAT ATATCCTATA
GGACGTCTTG ACTATGACAG TTCAGGATTA CTTTTATTAA CTAATGATGG AGATGTATAC
AATAAGATAA TACATCCAAG AGTTAATTTA AATAAAGAAT ATATTGCCTT AGTAAAAGGA
ATTTTTACAG AGGAAGAAAT GAATAAATTT AGAAAAGGCG TAGATATAGG AGACTATAAA
ACAGCAGAAT GTGAAATAGA ATTACTAGAA AAATACACAA ATAGCTGTAA AGTTAAAATA
ATCATTCATG AAGGCAAAAA TAGACAGATA AGAAGAATGT GTGCTGCCTT TAATCATGAA
GTTGTTTCTT TAAAAAGAGA AGCTATTGGA AGCTTGACCT TAAAGAATTT AAAGAAAGGA
GAATGGAGAT ATTTAAGTAG TTCAGAAGAG AATTATATAA AATCTCTATA G
|
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| Protein sequence | MEERLQKYMA RCGVASRRKC EEIICSGKVK VNDIVVDSLG TKVDPSVDVV SVNNKVIRPE
ENKVYIMLNK PEGYVTTNKD EKNRKTILDI VKVNERIYPI GRLDYDSSGL LLLTNDGDVY
NKIIHPRVNL NKEYIALVKG IFTEEEMNKF RKGVDIGDYK TAECEIELLE KYTNSCKVKI
IIHEGKNRQI RRMCAAFNHE VVSLKREAIG SLTLKNLKKG EWRYLSSSEE NYIKSL
|
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