| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1245 |
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| Symbol | sdhB |
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| ID | 4203203 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | + |
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| Start bp | 1418694 |
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| End bp | 1419374 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 638082126 |
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| Product | L-serine dehydratase, iron-sulfur-dependent, beta subunit |
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| Protein accession | YP_695691 |
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| Protein GI | 110799908 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1760] L-serine deaminase |
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| TIGRFAM ID | [TIGR00719] L-serine dehydratase, iron-sulfur-dependent, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0325404 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATAATC TTTGTGTTTT TGATATATTA GGTCCAGTAA TGGTTGGACC ATCATCATCT
CATACAGCGG GAGCAGCTAG ACTAGGAAAG GTAGCTAGAG CAGTTGCTGG AGAAAAAATT
ATAGATGTTA AATTTTTGCT TCATGGATCT TTTGCTAAAA CATATAAAGG TCATGGAACT
GATAAGGCTT TACTTGCAGG TATATTAGGA ATGAAGCCAG ATGATGAAAG GCTTAGAAGT
TCATTAGCTA TTGCTAAAGA GGAAGGATTA AACTTTGAAT TTATAGAAAG AGATTTAGGA
GATTACCATC CAAATACAGT TAAATTTGTT ATGGAGTGTG AATCTGGAAA AGTTTGCGAG
GTATTAGGGT CATCAGTAGG TGGAGGAAGC ATAGAAATAG TTGAGGTAAA TGGAAATGAA
GCTAATTTTA GTGGAGCATA TCCAACACTT ATTACATGTC ATGATGATAA ATTTGGTACT
GTAAATAAAG TAACAAAACT TCTTCTTGAA CATGAAATTA ATATTGCTTT TATGAACGTT
TCAAGAACTC AGAAGGGAAT GGACGCTACT ATGACTTTAG AAATAGATAA TAAGATTGAT
GAATCTGTTA TAAAGAGAAT GGAAGAAATA GATGGAATAA AAAAAGTTAT ACTTATAAAT
TTAGAAGAAG AGGAGAAATA A
|
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| Protein sequence | MNNLCVFDIL GPVMVGPSSS HTAGAARLGK VARAVAGEKI IDVKFLLHGS FAKTYKGHGT
DKALLAGILG MKPDDERLRS SLAIAKEEGL NFEFIERDLG DYHPNTVKFV MECESGKVCE
VLGSSVGGGS IEIVEVNGNE ANFSGAYPTL ITCHDDKFGT VNKVTKLLLE HEINIAFMNV
SRTQKGMDAT MTLEIDNKID ESVIKRMEEI DGIKKVILIN LEEEEK
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