Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1241 |
Symbol | spoVAF |
ID | 4202138 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 1411936 |
End bp | 1413357 |
Gene Length | 1422 bp |
Protein Length | 473 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 638082122 |
Product | spore germination protein AF |
Protein accession | YP_695687 |
Protein GI | 110798907 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0376224 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGACTTAA CATCAAATTT TGATAAAAAT ATAAATACTT TATCTAAAGC TTTAAGGGTT GGAAAAAGTT TTGATATAAT TGAGCGTTCA ATAATAATTG GGGATAAAAA AGCCACAATG TATTATATTG ATGGATTTGT AAAAGATGAC GTAATGGAAT TAATCATGAG TGACTTCTTT TCCTTAAGCA AAACTGAAAT GAACTTAATA AAATCACCTA AGGATTTTAT GAGAAGACAA ATCCCTTATG TAGAAGTAGC TGAAGAAGTA TCCATAGATA AAATAGTATC TCAAGTTCTC TGTGGACAGA CAGCATTAAT TTTAGAAGGA TTCTCCAGTG CAATAATGAT AGATTTAAGA ACCTATCCAG TTAGAGGGCC TCAAGAACCA GAAACTGAAA AAGTATTAAG GGGTTCTAGG GATGGCTTTG TAGAGACCAT TGTATTTAAT ACTGCATTAA TTAGAAGAAG AATAAGAGAT CCTAGACTTA CCTTTGAAAT GATGTCTATA GGAAATGTAT CAAAAACAGA TGTGGTTATA TCATTTTTAG ACGAGGTAGT TGATAAAAAA ACTCTTAATC TAATAAAAAA GAAATTTGAA AACTTAGATA TACAAGCATT AACCATGAGC GAACAAAGCC TTGTTGAATC TCTTTCAAAT GCCTCATGGT ATAATCCATT CCCTAAGGTT AGATATACAG AAAGGCCTGA TGTTGCAGCT GCCCATATAA CTGAGGGAAA GATAGTTGTT ATTATAGATA ACTCTCCTTC AGTTATAATT TTACCAACTA CTATCTTTGA TTTTATACAG GATGTTGATG ATTATTATCT TCCTGTAATA ACAGGTAATT TTATTCGTTT AATAAGAAAT TTTATACTAA TTTCTACTAT TTTTATAACC CCACTTTATT TGCTTTTAAT CCAAAATGCC TATAGAATAC CTGATTACTT AAAATTTTTA TTACCTGTTG ATGGCTATAA AGTTCCATTG ATAGTTCAAT TTTTACTTCT TGAAGTTGCA GTGGATGGAT TAAAACTTGC CTCTTTAAAT ACGCCAAATG CCCTTGGCAT GTCCTTATCT GTTATTGGAG GATTAATACT TGGCCAATTT GCTGTAGATA CTGGGTTGTT TTTACCACAA ACCATATTAT ATATGGCTAT AGTTACACTA GGAAGCTTTT CTCAACCTAG TTTAGAACTT AGCTATGCCT TAAAGTTTTG GAGAACTCTT TTGCTTATAT TAACAAGCCT ATTTAATGTA ATAGGATTTT TTGTAGGATT AATAATAGGA ATAGTTTTAA TTGCAAGTAA TAAAACTTTA ACTGGTGATT CCTACCTGTA TCCTCTTATT CCCCTTGACT GGAAAGCACT TAAAGCACTT ATCTTTAGAG TAAGATTAGT ACCTAAACAA AAAGAAGAAT AA
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Protein sequence | MDLTSNFDKN INTLSKALRV GKSFDIIERS IIIGDKKATM YYIDGFVKDD VMELIMSDFF SLSKTEMNLI KSPKDFMRRQ IPYVEVAEEV SIDKIVSQVL CGQTALILEG FSSAIMIDLR TYPVRGPQEP ETEKVLRGSR DGFVETIVFN TALIRRRIRD PRLTFEMMSI GNVSKTDVVI SFLDEVVDKK TLNLIKKKFE NLDIQALTMS EQSLVESLSN ASWYNPFPKV RYTERPDVAA AHITEGKIVV IIDNSPSVII LPTTIFDFIQ DVDDYYLPVI TGNFIRLIRN FILISTIFIT PLYLLLIQNA YRIPDYLKFL LPVDGYKVPL IVQFLLLEVA VDGLKLASLN TPNALGMSLS VIGGLILGQF AVDTGLFLPQ TILYMAIVTL GSFSQPSLEL SYALKFWRTL LLILTSLFNV IGFFVGLIIG IVLIASNKTL TGDSYLYPLI PLDWKALKAL IFRVRLVPKQ KEE
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