Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1220 |
Symbol | |
ID | 4202635 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 1384213 |
End bp | 1385850 |
Gene Length | 1638 bp |
Protein Length | 545 aa |
Translation table | 11 |
GC content | 22% |
IMG OID | 638082101 |
Product | GGDEF domain-containing protein |
Protein accession | YP_695666 |
Protein GI | 110799538 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.12727 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAATA GAAAAAAGAA ATATTTTTTA ATTTTATTAA TTTTTTTAAT AGTTATTAAT TTATTTATAT TTTCTTTTTA TAAATTTAAA GTAAATAAAA AAAATGAAAA ATATATAAAA AAAACTAATG TAATTTTATA TGAATCTAAA TTAGAGATGA AAAAAAGAAA TTTTAAAGAT TCTGAAAATA AACTTTATTC AATTATAGAT AATAAAGATA TGTTTTATAG TTTACCTGAT AATTTAAAGT TCGAAATTTA TAATTATTTA GCTATAATAA ATCTTCAACA AGAAAAATTT TTAAATGCTT TATCTTATTA TGAAGAAGCC TTTAAATATG CTGATAAAGA GTCAAAGATA ATTATTAAAC TAAACATGAC ATCTGCTTAT AGATATATGG GGGCCTATGT TACTGCTACT AATATTTTAG ATAAAATGCT AGATTCATCA TTATTATTTA GGAATGAAGA TTCTTACCTT AAAGAATATA CTTTATTAAA CTTAGCTGAA ACTTATTTTG CTGTAAATGA TATGACTGAT TTTAACTCTA CAATAGCAAA GGCATCTAAC TCTTATTATT ATGGCCCTGA AAATGATTTA GAAGACTTAA AAATCCTTTT AGATTCCTAT TTAATAATAA AAGCAATATC AGAAAATAAT CTTGATTTAG TACCAAACTA TATTTCTGAA ATAGAAGAAT TAGAGATTAA AAATAAAGAT GTTATATATT CTGAATTAGA AATGATTAAA ACTCGTTCTT ATGGTATGTA CTATAAAAGT ATTGGAGATT TTGATCTAGC ATTAGACTAC TTTTCAAAAC TAGAAAAATT AGCTGATAAT GAAGGTGCTT CTTATGTTTC ACTTTTTTCT ATCAGCGAAA GAATATCAAT TTATAGAAAA CTAAATGATA ATAAGCAGGT AGATTCTTTA ATAAATAAAT ATTATGAAAA ACAAACTTCA ATAAATGATA TAAATAACTA TGAATTTAAA TATTATATAG ATAATAAAAT TATAAACAAT CACGAATTAC CATTTTTAAA AGAGACCATT ATTATTTTGA TAATTCTATT TTTAACCTCT ATTCTATTAG TGCTTTTTTA CTTAAAAAAA GCTAGGGATT CAAAATTAGA TTCTTTAAAA GATGGGCTTT GCAATATTTA TAACAGGCGT TTTTTAGACT CTTACATAAA TAATTTAAAA GAAAAAGATT TGCCTATTTC TTTTCTAATG ATAGATGTAG ATTATTTTAA ACTTTATAAT GATAATTATG GTCATCAAGC TGGTGATTTT ATACTAAAAA GTATAGCCTC TGTACTTGAA AAAAACTCTC GTAAAGAAGA TATAGTTGCA CGTTATGGAG GGGAAGAATT TTGTGTTTTA CTAAAAGGTG CTTCTAAGTA TTCTTCTATT AACTACGCTA AAAGAATCAA AGAAAATTTA GATAATTTAA ATATAAAACA TAAATATTCA AAGACTTCAG ACCATGTAAC CTTTAGTATT GGAATATATA CTACATATAC TAAAAATGAT CTGAAAAATG CAATTAAATT TTCTGATAAA GCACTATATA TATCTAAAAC AAGAGGAAGA AATACCTATA CTTATCTAGA AGATAACTCT TCTGATTCTT CTAATTAA
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Protein sequence | MKNRKKKYFL ILLIFLIVIN LFIFSFYKFK VNKKNEKYIK KTNVILYESK LEMKKRNFKD SENKLYSIID NKDMFYSLPD NLKFEIYNYL AIINLQQEKF LNALSYYEEA FKYADKESKI IIKLNMTSAY RYMGAYVTAT NILDKMLDSS LLFRNEDSYL KEYTLLNLAE TYFAVNDMTD FNSTIAKASN SYYYGPENDL EDLKILLDSY LIIKAISENN LDLVPNYISE IEELEIKNKD VIYSELEMIK TRSYGMYYKS IGDFDLALDY FSKLEKLADN EGASYVSLFS ISERISIYRK LNDNKQVDSL INKYYEKQTS INDINNYEFK YYIDNKIINN HELPFLKETI IILIILFLTS ILLVLFYLKK ARDSKLDSLK DGLCNIYNRR FLDSYINNLK EKDLPISFLM IDVDYFKLYN DNYGHQAGDF ILKSIASVLE KNSRKEDIVA RYGGEEFCVL LKGASKYSSI NYAKRIKENL DNLNIKHKYS KTSDHVTFSI GIYTTYTKND LKNAIKFSDK ALYISKTRGR NTYTYLEDNS SDSSN
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