Gene CPF_1213 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1213 
SymbolkdpD 
ID4203914 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp1376625 
End bp1379327 
Gene Length2703 bp 
Protein Length900 aa 
Translation table11 
GC content28% 
IMG OID638082094 
Productsensor histidine kinase KdpD 
Protein accessionYP_695659 
Protein GI110799898 
COG category[T] Signal transduction mechanisms 
COG ID[COG2205] Osmosensitive K+ channel histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGGGAAA CTCGTCCTAA TCCACAGGAA ATATTAAAAG AAATAAATAA GAATGAAAAA 
GATAGTAAAA GAGGAAAACT TAAAATTTTC TTTGGATATG CTGCTGGGGT TGGGAAAACA
TATGCAATGT TAGAAGCGGC ACATTCAGCA ATTGCTATGG GACTAGATGT TGTAGTTGGA
TATATTGAGC CTCATACAAG ACCAGAAACC CTAGCACTTT TAGAAGGATT AGAATTATTA
CCTAATTTAG AAGTAGCATA TAGAGGATTG GTATTAAGGG AATTTAATTT AGATTTAGCT
TTAAGTAGAA AACCAGATTT AATCATTGTG GACGAGTTAG CTCATACCAA TGTTAAGGGA
CTTAGACATG AAAAGAGATA TAGTGATATA GAGGAATTAT TAGATGCTGG CATAGATGTT
TATACTACTC TTAATGTTCA ACACATAGAG AGTTTAAATG ATGTAGTGGC ATCTATAACT
AATATAGTTG TTAAAGAGAG AATACCTGAT AGAATATTTA AAAATGCTTT TCAAATTGAA
TTAATAGATG TAGATCCATC TGTCTTGATT GAAAGATTAA ATAGTGGAAA AATATATGTT
AAAAATCAAG CAAAAAAGGC ATTAAAAAAC TTTTTTATAA GAGAAAACTT AGTTGCTTTG
AGAGAGTTAG CCTTAAGAGA GACTGCTAAT AGTGTAAATA AAGAGGTTAT GATAAATAAA
AATGAAAATT TTTATCATAC TAATGAGCAT ATATTGGTAT GTTTAAGTTC TTCCCCTTCA
AATAGTAAAG TAATTAGAAC ATCAGCAAGA ATGGCAGAAG CCTTTCATGG AAAGTTTACT
GCTTTATTTG TTGAAACAAC TTCATCAAGA GAATTAAAAG AAGGAAATAT TGAAAGGTTA
AGAGAACATG TTAAATTAGC AAAAGATTTA GGGGCTAAAA TAGAAACAGT TTATGGAGAT
GATGTTGCAT ATCAAGTTTC AGAGTTTTCT AAGATTAGTT CAGTTTCAAA AGTTATAATA
GGGAGAACAA AGAAGAAAAG ACATCTATGG TCAAGATTTG GTATTGTAGA CAGATTAATA
GAATTAGCTC CAGAGCTAGA CGTTTATATA ATACCAGATG AAGAAGAAAA TGTAGAAGAT
ATAAATAAAA TTTGCTTAAA TAAAGAAAAA ATAACAATTA AAGATTCTTT AAAAACTTTG
GGGATTTTAA TTATTACAAT TATTATAAGC TTATTCTTTG AAAATTTAGG TTTTAGTGAA
GCTAATATAA TAATAGTATT TATTTTAGGT GTTTTAATTA TAGCAAAGGA GACTTATGGA
AGAATATATG GAGTTATATC TTCCTTATTT AGTGTTTTAC TTTTCAACTT TTTCTTCACG
GAACCTAAAT TTACTTTTAA TGCTTATGAT TCAAGCTATA TATTTACGTT TTTTATAATG
CTTGTATCAG CTTTAATAAC TAGTACTCTT ACAAATAAAG TTAAAGTACA GGCTAATAAA
TCAGCAATAA CAGCATATAG AACAAATATT TTATTAGAAT CTAGTAGTGA GCTTGGAAGA
TGTTCAGATT TAGAAGAAAT TATTTTAAAG TCTCAAGAGC AAGTTAGTAG ATTAGTAAAA
AAACCTGTAG TAGTTTATAA GGCGAAGAAT AGTCAAATTG AAAATATATA TAATTATAAA
TTCAAAGATG GAAGTGAATT AAGTGATAAA TATATTAACT TAGACGAACA GGGAGTAGTA
CTTTGGGTTA TCAATAATAG AAAATATGCT GGAAAGGGTA CAGAAACATT GCCTGGAGCT
AAAGCTATGT ATATTCCTGT ATTAGGACAA GAGGATATAG GCATAGTAAT AGGGATAATT
TTAGAAGAAG GAGAGGAATT AGAGGAAGGA GAAAAATCCT TACTAATTGC AATGATAAAT
CAAGTATCTT TTGTCATAGA TAATTATATT TTAGAAGAAG CAAAGAAGCA GGCTTTAATG
CAAGCTGAGA ATGAAAAATT TAAAGCAAAT TTATTAAGGG CTGTTTCTCA TGATTTAAGA
ACACCCTTAA CAAGTATATC TGGAAGTGCA AGTTTGCTTT TAAATAATAA TTTTGACGAA
GAAACTAAAA GAAAGTTAAC ATTAGATATA TATGATGATT CAATTTGGTT AATAAACTTA
GTTGAAAATT TACTTTCTGT TTCAAGAATA GATAATGGAA ATATAAATTT AAATAGAGAA
GCTCAATTAG TAGAAGAAAT TATTTTAGAG GCTTTGCAAC ATGTTAATAG AAATGCCTGT
GACTATAATA TAGAAATTGA TTTGAAAGAT GAATTGTTAA TGGTTAATGC TGATGTAAGA
CTTATAATAC AAGTAATAAT AAATATTGTT GATAATGCAA TAAAGTATAC AGAAAAAGGA
TCAAATATAA AAATAAGTGC CTTTTCAAAA GGAGATAATG TAATAATTGA GATAGCAGAT
AATGGTGTAG GAATTAGTAA AGAAGATAAG GAACATATAT TTGATATGTT TTTTACATCT
AAGAAAAATA TTAGTGATAG TAGAAGAGGA TTAGGGTTAG GATTAGCATT GTGCAAATCA
ATTATAAATG TACATGAAGG AGAAATATAT GTTAGAGATA ATAAACCTAG GGGAACTATA
ATTGGCTTTA GTTTGCAGAG ATTTGAGGTG AATAATAATG AAACCAGCAA TTTTAGTTAT
TGA
 
Protein sequence
MRETRPNPQE ILKEINKNEK DSKRGKLKIF FGYAAGVGKT YAMLEAAHSA IAMGLDVVVG 
YIEPHTRPET LALLEGLELL PNLEVAYRGL VLREFNLDLA LSRKPDLIIV DELAHTNVKG
LRHEKRYSDI EELLDAGIDV YTTLNVQHIE SLNDVVASIT NIVVKERIPD RIFKNAFQIE
LIDVDPSVLI ERLNSGKIYV KNQAKKALKN FFIRENLVAL RELALRETAN SVNKEVMINK
NENFYHTNEH ILVCLSSSPS NSKVIRTSAR MAEAFHGKFT ALFVETTSSR ELKEGNIERL
REHVKLAKDL GAKIETVYGD DVAYQVSEFS KISSVSKVII GRTKKKRHLW SRFGIVDRLI
ELAPELDVYI IPDEEENVED INKICLNKEK ITIKDSLKTL GILIITIIIS LFFENLGFSE
ANIIIVFILG VLIIAKETYG RIYGVISSLF SVLLFNFFFT EPKFTFNAYD SSYIFTFFIM
LVSALITSTL TNKVKVQANK SAITAYRTNI LLESSSELGR CSDLEEIILK SQEQVSRLVK
KPVVVYKAKN SQIENIYNYK FKDGSELSDK YINLDEQGVV LWVINNRKYA GKGTETLPGA
KAMYIPVLGQ EDIGIVIGII LEEGEELEEG EKSLLIAMIN QVSFVIDNYI LEEAKKQALM
QAENEKFKAN LLRAVSHDLR TPLTSISGSA SLLLNNNFDE ETKRKLTLDI YDDSIWLINL
VENLLSVSRI DNGNINLNRE AQLVEEIILE ALQHVNRNAC DYNIEIDLKD ELLMVNADVR
LIIQVIINIV DNAIKYTEKG SNIKISAFSK GDNVIIEIAD NGVGISKEDK EHIFDMFFTS
KKNISDSRRG LGLGLALCKS IINVHEGEIY VRDNKPRGTI IGFSLQRFEV NNNETSNFSY