Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1213 |
Symbol | kdpD |
ID | 4203914 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | + |
Start bp | 1376625 |
End bp | 1379327 |
Gene Length | 2703 bp |
Protein Length | 900 aa |
Translation table | 11 |
GC content | 28% |
IMG OID | 638082094 |
Product | sensor histidine kinase KdpD |
Protein accession | YP_695659 |
Protein GI | 110799898 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGGGAAA CTCGTCCTAA TCCACAGGAA ATATTAAAAG AAATAAATAA GAATGAAAAA GATAGTAAAA GAGGAAAACT TAAAATTTTC TTTGGATATG CTGCTGGGGT TGGGAAAACA TATGCAATGT TAGAAGCGGC ACATTCAGCA ATTGCTATGG GACTAGATGT TGTAGTTGGA TATATTGAGC CTCATACAAG ACCAGAAACC CTAGCACTTT TAGAAGGATT AGAATTATTA CCTAATTTAG AAGTAGCATA TAGAGGATTG GTATTAAGGG AATTTAATTT AGATTTAGCT TTAAGTAGAA AACCAGATTT AATCATTGTG GACGAGTTAG CTCATACCAA TGTTAAGGGA CTTAGACATG AAAAGAGATA TAGTGATATA GAGGAATTAT TAGATGCTGG CATAGATGTT TATACTACTC TTAATGTTCA ACACATAGAG AGTTTAAATG ATGTAGTGGC ATCTATAACT AATATAGTTG TTAAAGAGAG AATACCTGAT AGAATATTTA AAAATGCTTT TCAAATTGAA TTAATAGATG TAGATCCATC TGTCTTGATT GAAAGATTAA ATAGTGGAAA AATATATGTT AAAAATCAAG CAAAAAAGGC ATTAAAAAAC TTTTTTATAA GAGAAAACTT AGTTGCTTTG AGAGAGTTAG CCTTAAGAGA GACTGCTAAT AGTGTAAATA AAGAGGTTAT GATAAATAAA AATGAAAATT TTTATCATAC TAATGAGCAT ATATTGGTAT GTTTAAGTTC TTCCCCTTCA AATAGTAAAG TAATTAGAAC ATCAGCAAGA ATGGCAGAAG CCTTTCATGG AAAGTTTACT GCTTTATTTG TTGAAACAAC TTCATCAAGA GAATTAAAAG AAGGAAATAT TGAAAGGTTA AGAGAACATG TTAAATTAGC AAAAGATTTA GGGGCTAAAA TAGAAACAGT TTATGGAGAT GATGTTGCAT ATCAAGTTTC AGAGTTTTCT AAGATTAGTT CAGTTTCAAA AGTTATAATA GGGAGAACAA AGAAGAAAAG ACATCTATGG TCAAGATTTG GTATTGTAGA CAGATTAATA GAATTAGCTC CAGAGCTAGA CGTTTATATA ATACCAGATG AAGAAGAAAA TGTAGAAGAT ATAAATAAAA TTTGCTTAAA TAAAGAAAAA ATAACAATTA AAGATTCTTT AAAAACTTTG GGGATTTTAA TTATTACAAT TATTATAAGC TTATTCTTTG AAAATTTAGG TTTTAGTGAA GCTAATATAA TAATAGTATT TATTTTAGGT GTTTTAATTA TAGCAAAGGA GACTTATGGA AGAATATATG GAGTTATATC TTCCTTATTT AGTGTTTTAC TTTTCAACTT TTTCTTCACG GAACCTAAAT TTACTTTTAA TGCTTATGAT TCAAGCTATA TATTTACGTT TTTTATAATG CTTGTATCAG CTTTAATAAC TAGTACTCTT ACAAATAAAG TTAAAGTACA GGCTAATAAA TCAGCAATAA CAGCATATAG AACAAATATT TTATTAGAAT CTAGTAGTGA GCTTGGAAGA TGTTCAGATT TAGAAGAAAT TATTTTAAAG TCTCAAGAGC AAGTTAGTAG ATTAGTAAAA AAACCTGTAG TAGTTTATAA GGCGAAGAAT AGTCAAATTG AAAATATATA TAATTATAAA TTCAAAGATG GAAGTGAATT AAGTGATAAA TATATTAACT TAGACGAACA GGGAGTAGTA CTTTGGGTTA TCAATAATAG AAAATATGCT GGAAAGGGTA CAGAAACATT GCCTGGAGCT AAAGCTATGT ATATTCCTGT ATTAGGACAA GAGGATATAG GCATAGTAAT AGGGATAATT TTAGAAGAAG GAGAGGAATT AGAGGAAGGA GAAAAATCCT TACTAATTGC AATGATAAAT CAAGTATCTT TTGTCATAGA TAATTATATT TTAGAAGAAG CAAAGAAGCA GGCTTTAATG CAAGCTGAGA ATGAAAAATT TAAAGCAAAT TTATTAAGGG CTGTTTCTCA TGATTTAAGA ACACCCTTAA CAAGTATATC TGGAAGTGCA AGTTTGCTTT TAAATAATAA TTTTGACGAA GAAACTAAAA GAAAGTTAAC ATTAGATATA TATGATGATT CAATTTGGTT AATAAACTTA GTTGAAAATT TACTTTCTGT TTCAAGAATA GATAATGGAA ATATAAATTT AAATAGAGAA GCTCAATTAG TAGAAGAAAT TATTTTAGAG GCTTTGCAAC ATGTTAATAG AAATGCCTGT GACTATAATA TAGAAATTGA TTTGAAAGAT GAATTGTTAA TGGTTAATGC TGATGTAAGA CTTATAATAC AAGTAATAAT AAATATTGTT GATAATGCAA TAAAGTATAC AGAAAAAGGA TCAAATATAA AAATAAGTGC CTTTTCAAAA GGAGATAATG TAATAATTGA GATAGCAGAT AATGGTGTAG GAATTAGTAA AGAAGATAAG GAACATATAT TTGATATGTT TTTTACATCT AAGAAAAATA TTAGTGATAG TAGAAGAGGA TTAGGGTTAG GATTAGCATT GTGCAAATCA ATTATAAATG TACATGAAGG AGAAATATAT GTTAGAGATA ATAAACCTAG GGGAACTATA ATTGGCTTTA GTTTGCAGAG ATTTGAGGTG AATAATAATG AAACCAGCAA TTTTAGTTAT TGA
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Protein sequence | MRETRPNPQE ILKEINKNEK DSKRGKLKIF FGYAAGVGKT YAMLEAAHSA IAMGLDVVVG YIEPHTRPET LALLEGLELL PNLEVAYRGL VLREFNLDLA LSRKPDLIIV DELAHTNVKG LRHEKRYSDI EELLDAGIDV YTTLNVQHIE SLNDVVASIT NIVVKERIPD RIFKNAFQIE LIDVDPSVLI ERLNSGKIYV KNQAKKALKN FFIRENLVAL RELALRETAN SVNKEVMINK NENFYHTNEH ILVCLSSSPS NSKVIRTSAR MAEAFHGKFT ALFVETTSSR ELKEGNIERL REHVKLAKDL GAKIETVYGD DVAYQVSEFS KISSVSKVII GRTKKKRHLW SRFGIVDRLI ELAPELDVYI IPDEEENVED INKICLNKEK ITIKDSLKTL GILIITIIIS LFFENLGFSE ANIIIVFILG VLIIAKETYG RIYGVISSLF SVLLFNFFFT EPKFTFNAYD SSYIFTFFIM LVSALITSTL TNKVKVQANK SAITAYRTNI LLESSSELGR CSDLEEIILK SQEQVSRLVK KPVVVYKAKN SQIENIYNYK FKDGSELSDK YINLDEQGVV LWVINNRKYA GKGTETLPGA KAMYIPVLGQ EDIGIVIGII LEEGEELEEG EKSLLIAMIN QVSFVIDNYI LEEAKKQALM QAENEKFKAN LLRAVSHDLR TPLTSISGSA SLLLNNNFDE ETKRKLTLDI YDDSIWLINL VENLLSVSRI DNGNINLNRE AQLVEEIILE ALQHVNRNAC DYNIEIDLKD ELLMVNADVR LIIQVIINIV DNAIKYTEKG SNIKISAFSK GDNVIIEIAD NGVGISKEDK EHIFDMFFTS KKNISDSRRG LGLGLALCKS IINVHEGEIY VRDNKPRGTI IGFSLQRFEV NNNETSNFSY
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