Gene CPF_1142 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1142 
Symbol 
ID4201833 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand+ 
Start bp1303940 
End bp1304629 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content28% 
IMG OID638082023 
Producthypothetical protein 
Protein accessionYP_695588 
Protein GI110800401 
COG category[S] Function unknown 
COG ID[COG1285] Uncharacterized membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0728659 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAATC AAGCAGTTAA TTTTAGTGAC ATATTTAAAT CAAGTTTTGT TGATAAAATG 
ACATCTATTT CATTTTTAGA CATGTTTATA GCAATGATCC TTTCTTTTGC AGTAGGATTA 
TTTATAATGC AGGTTTACAA AAAAACATTT AAGGGAGTTA TGTATTCATC AACTTTTGCA 
ATGTCTTTAC TGGCACTTAC TTTAATAACT ACATTAATTA TACTTGGAGT TACTTCTAAC 
GTAGTTCTTT CACTTGGTAT GGTTGGTGCA CTTTCTATAG TTCGTTTTAG AAGTGCTATA 
AAAGAACCTA TGGATATTGC ATTCTTATTT TGGTCAATAA GTGAAGGTAT AGTTTTAGGT 
GCTGGCCTTA TTCCTTTAGC TATTTTAGGT GCCGTTTTTA TAGGAATAGT AATGGTTCTA 
TTTGCTAATA AGAAAACAAC AGATAATCCA TATATATTAG TGGTTAATTG TAAAAATGAT 
ATTAGTGAAA ATAGTGTACT TAACATACTA TCTAAAAATG TAAACAAATA TTGTGTTAAA 
TCAAAAACTA TTTCTCCTTC AAATGGAATT GAAATGACAA TAGAAGTTAA GTTAAAGAAT 
ATAACTACAT CCTTTGTTAA TGAAGTATCA AAAATAGAGG GAGTTTCAAA TGCTGTTTTA 
GTTAGCTATA ACGGAGATTA CATGGCTTAA
 
Protein sequence
MSNQAVNFSD IFKSSFVDKM TSISFLDMFI AMILSFAVGL FIMQVYKKTF KGVMYSSTFA 
MSLLALTLIT TLIILGVTSN VVLSLGMVGA LSIVRFRSAI KEPMDIAFLF WSISEGIVLG 
AGLIPLAILG AVFIGIVMVL FANKKTTDNP YILVVNCKND ISENSVLNIL SKNVNKYCVK 
SKTISPSNGI EMTIEVKLKN ITTSFVNEVS KIEGVSNAVL VSYNGDYMA