Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1087 |
Symbol | |
ID | 4203707 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | + |
Start bp | 1237102 |
End bp | 1245018 |
Gene Length | 7917 bp |
Protein Length | 2638 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 638081968 |
Product | pullulanase family protein |
Protein accession | YP_695533 |
Protein GI | 110800040 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain [TIGR02104] pullulanase, type I |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGGTTT TATTTACATT CTTGTTTAGT TTTTTACCTC ATATGCCAGT AATGGCTGAA GTAGAAAATA ATAATACTAA AGCAAATGAA AAGACTTTAG TTAAGAATGA GAGTGAAGCT TTTGCTGTAG TTGTGGGAGA TTTTTTAAAA GAAAGTGGTA ACGGTTCCGA TTGGGATCCA AGAAATATGA ATGGAGTGCT GAAAAAGTAT AAAAATGGTT TATATGAAGG GGCTTTAAAG TTAAAGGCAG GAAATTATAA TTATAAAATT GCCATGAATG GAACTTGGGA TGAGAGCTAT GGTAATAATG GTCAAAACAT AGCTTTGAAT TTATCAAAAG ATTCAGAGGT AATATTTAGG TTGGATTATA AAAATAAAAA GGTAGATGAT TCAATAAATA ATCCTGATCA ATTTAAAACT AAGGCTATTT TAGCAGGTAA TATAAAGGAT ATAATTGATG GGGCTTCTGA TTGGAATCCT GGTAACGATA CCGAGAAGCT TGATTATATA GGTGGAGGTA TGTATAAAAA GACTTTCCCT ATAAAAGAGA GTGCACGAGG AAAAGATATA AGTTTAGAAT ACAAAGTTTC ATATAATGGA GAGTGGAATA ATGGTGAAGT AGCAGAAAAT GCTAAGGTAG TAATTCCAAA GGGTACTAAA AACATAACTA TTCTAAGCAA TTATTTAGAT AATTATGTTA AGGATTCAAT AAATAATCCA AGTCTTTCTA ATACAGTTTC CCTAATAGGA ACAGTTAGAG AAGGAAATGG AGATTGGGAT GTAAATAACA AAAATTTTGA AATGCATAAT CTTGATGAAA ATAGGGTTTT ATATTCTAAG GTAATGAAAA AAGGAACTTA TGAGTATAAA GGCCTTGTAA ATCATTCTTG GGATAATGGA GGAATACCAT CTCAAGGAAA TGTTACTTTA AATGTGCCAG AGGACAGAAA TGTTATCTTT GTAGCAGATT TAAAAAATAA TAAAATATAC GATTCAATAA ATAACACTAA AGAAATAAAT AACACTAAAG AAATAAATGA GGCATTAGGA ATAAAAGGTG ATGAAAATAC AGGTGAAGAT AATAATGATG GAAATCAAGG AGAAAGTGAA AACAAGCCAG ATTCAGTAAA AAGTCCTGTA GTAAATGAGG ATGGAACAGT AACTTTTAGT GCTAAGTTTA ATGGTGATAG CTTGTATCTT ATAGGATCTA TGGTATCTTG GGATACAAGT AAGCAAATTG AAATGAAAAA GGGAGAAGAT GGTGTATTTA AAGTAACAAT ACCTTTAACT GGTGGAGTTT ATGAATATAA GTTTAAACCT AATAAGGATA ATTGGGATAA TTCATTTACA GACCCATCTA ATAAGGTCAT GGCTAATGGA AATTCAGTAT TAAATATGCC AGGTTTAGAA ATAGGTGGAG AATCAAGTGT TGAAGTAGGT AGCAATACAA AGTTAGTTGC ATATATCTAT GACACTGAAG GGAATAAAAA AGAAGCTAAT GTTAATTGGT CTTTAGAGGA ACCAGTAAGT GGAGTATCTA TTAAAGAAAA TACTTTAAAA GTTTCTAAGG ATGTAGATTC CAGTAAGAAA ATAAAGATTA AAGCTACTGA TGGAAAATAC TCAGTTAGTA AAGAACTTGC TATTTTATCT CAAATGTATA CCTATACAAT AAATTATTAT AGATTTGATG GTAATTATGA TAATTGGAAT TTATGGTTAT GGCAAACAGG TGGAGAAGGA AAAGGTTATG ACTTCAATAA AAAAGATGAA GCTGAAAAAG GCTTCACAAG AGCAGTCTAT AAATTCCCAT CTGATAAATT AAACTTCCTT ATTAGAAAAG GAAATTGGGA AGATAAAGAT GTTGGACATG ATAGAACCAT AGAAGTTAAG AATGGAAATA ATGTAGAAGT ATGGCTAATA CAAGGGGATG AAAATATTTA TTATGATAAG AAGGATGTAG ATACCTCACC TAAATTAATA TCTGCCTTAA TGGATAGTAA AACAGACCTT TTAGTTACTT CTGCTGGAAA TATAGAAGAT TCAGAGTTAG ATTCTTTCAA ATTAATTGAT AAGACTGATA ATAAGGAAAT TAAAACAAGT GCAATTAAAG TATCTGATAA TAAAGTTAAA TTAACTTTAA AGAAAGGATT CTTTAGTACT CCAGAAATTG ATCTAAGTCA TGATTATGAA GTTAGCAGTA ATAGCTTTAG AGCAACCAAG GTTACTATGA GAAAAATCTT AGATGATCCA GAATATTTCT ACAATGGAGA TGACTTAGGG GTAACTTACA AAAAAGATTC TTCAACATTT AAATTATGGG CACCAACAGC TAAGGAAGTT AGCTTAGTAT TATATGATAA TGAGGGAACT TATGATGAAA ATGGAAAAGT AACAGATAAT ACTGGTGGAA GAGAAATTTC TATGAAGAAG GAGAATAAAG GAGTTTGGAG CCTAAAAGTA GATGAAGACT TAGAAGGTAA GTACTATATG TACAAAGTAA GCTTTTCAGA TGGAAAAACA AATTATGCTA TAGATCCATA TGCCAAGGCT GTTTCAGCTA ATGGCCAAAG AGGGGCTATA ATTGATTTTT CATCTACAAA CCCATCAGAA TGGGGAAGTG TAAAGAAACC TCCTATGTTA AATCCTACAG ATTCAATTTT ATACGAAATG CATGTTAGAG ATTTTTCAAT ATCTAAAGAT TCAGGAATAA ATAATAAAGG TAAATTTGAA GGGATAGCAG AGGAAGGAAC AAAGGTTCCA GGAACTGATG TTAAAACAGG AATAGATCAT TTAAAAGAGT TAGGTATAAC AACAGTTCAT TTATTACCAT CTTTTGATTA TGCTTCAGTT AATGAAATAA GCAATAAGCC TCAATTTAAC TGGGGATATG ATCCTCAAAA CTATAATTCC TTAGAGGGAT CATATTCAAC AAATGCTGAA GATCCAAAAT CAAGAGTAAG AGAATTTAAA GATATGGTAC AAACTCTTCA CAAAAATGGA ATAAGAGTGG TTATGGATGT GGTTTATAAT CATACTTATG GAATAGGTCA AAACTCACCT TTTGATCCAG TTGTACCAGG ATATTTTTAT AGAACTAATG ATGAAGGTAA ATACACTAAT GGATCAGGAT GTGGTAATGA AGTTGCAACA GAAAGACCTA TGGTTAGAAA ATATATAAAA GATTCTGTTA AGTATTTAGC TAAAGAATAT GATGTTGATG GATTTAGATT CGATTTAATG GGATTAATAG ATACAAAAAC TATGAGTGAA CTAACAACTG AGTTAAGAAA TGAAATTGAT CCAAGTTTAA TAATATATGG TGAACCATGG CAAGCTGGAG GAAGTGCACT TCCACAAGAA CAACAAACTT TAAAGGGAAG CCAAAAAGGT AAGGGCTTTG CCGTATTTAA TGATAATTTT AGAAACGCTA TAAAAGGTGA TAGTGATGGA GCAGGACAAG GATTTGCCAC TGGAGCTAGT GGTAAAGAAG GAGCTATAGT AGCTGGGGTT AAAGGATCAG TTGATGATTT TACTGATAGT CCAAGTGAAA CAATAAACTA TGTAACTGCT CATGATAATT TAAATCTTTG GGATAAGATT ATAAAGGCAG CAGGCAAAGA AAAAGCTGCA GGTTTCTTAG AAATGAGAGA TGGAGTTTTA ACAGGGGAAG ATGCTAATAA ATATTCTTCA GTTCAAGAGG CAGTTAACAA GAAAGCTAAA CCATATAGTG TAATAACAGA GACTAATCCT TTAGATAATG AATATGTAAG AAGAAGTATA TTAACAACTG CTATTACAAT AACTTCACAA GGAATTCCAT TCTTCCAAGC TGGAGATGAA TTCTTAAGAA GTAAATATGG AGATCACAAT AGCTATAAGA GTCCAGATGC TATAAATAAA ATAAACTGGC AAAATAAAGA AAAGTTTAGT GGAGTATTTG ATTATTACCA AGGATTAATA TCTTTAAGAA AATCACATCC AGCCTTTAGA ATGGATACAA AGGCTGCTAT TGAAAGTAAT TTAGTAGTAA CTAAAGCTAA TGATAATATA GTTGTATTTC AACTTAAAAA CTTTGCTAAT GGAGATTCAT GGAAGAATAT AGTGGTGGCT TATAATGGAA ATAATGCTGA GAAGGAAATT TCTCTTCCAC ATGAAGGCGA TTGGAATGTG GTAGTAAATG AACACAAGGC TGGAACAAGT GTCTTAGAAT CTCTTAAGGG AGTAAATTCA GTAAAGGTTG CACCTTTATC AGCTAAGGTT CTTTATGATG AAAGTGTAGA AGGAGAAGCA CAAACTCCAA CATCTATAGA TGTTACTCCT TCAAGCTTAA AATTAGATAT AGGAGCTTCA AATTTCTTGA AGGCAGTAAT TAAAGACCAA AATGGAAGAA TAATTCCTAA TGCAGAAATA AAATGGAATG TTTCAGATGA CTCAGTAATA AAGGTTGATT CAAATAATGG AAAAGTAACT GCTTTAAAAG AAGGAAAGTC AATTATAACT TTAAACTCTG GAAGTTTAAC TAAGGACGTA GAAGTAGAGG TTGTTCATCT TGTTCCAAGC TCTTTAGAAT TAAATGGTCC AAATCAAGTT TATACAGGGA AGGATATTCA ACTTAATGGA ATTGTTAAGG ATCAATTTGG ACAAGTAATC TCAGGGGCAA ACATAGAGTG GTTCTCTTCA GATGAAAGCA TAGCTAAAGT ATCAACTTTA GGAGTGGTTC AAGGAATTAG TGAAGGCAAA GTTAAAATAA CAGCTAAGAG TGGAAAGGCT AAGGCTACTA AGGAAATAGA AGTTAAAAAA TATACTAAAA AGTATATAGA ATTCACTTAT GTTAGAGATG ATAAAAACTA TGATGGATGG AATATTTGGA CTTGGCAAAC AGGGATAAAT GATGGTCAAC AAAACTTTAC TCAAATAAAA GATGGAAAAG CAATATCTAA GTTTGAAATA GCACCAGATG TAACTCAGGT TGGATTTGTT TTAAGAAAGG GTACTGGATG GGATGAAAAA GATCCATATG AATCAGATAG ATATATACAA ATAGATCCAT CAATGAATGT AACAAAGGTA ACTGTTAAGA GTGGAGTGGG AGAGTTCTTC CAAGTTCCAG CTATAAAAAA TGCTGAAATA CAAGAAGGAA ATATTAACTT TAAATATAGG GATGAAGCTT TATATGAAGA GAGTAATCAA TCTTCAATAG ATAAGGTTCA AGTTAAGGTT ACTTCACCAG GAATATTATT TAAGGATACA AAGACTTATG ATATGGATTA TGATTCACAA AATGAGTTCT TTGCATATTC ATTAAAGGAT ATAAAACCTG GAACTTATGA ATATAGTTTC TTAGTTACTA AGGATGGTAA AACAGTTGAA ACTGAAAAAC AAACAATAGA ATATTCTCCA TTAAAAATAA ATGGAGAGGT TACTTTCAAA AATAATCAGG TTAACTATGA TGAAAATGCC CTTGTAAATC TAAAATTAAG TGGAAGTGAT GCTAAAAAAG AAAATATAAA AGAAGTTTAT ATGGACCTTA CAAATGTAGG TGGCCCTAAT AAGGTGTTAA TGGATTTAAA TTTATTAAAG GATAATTCAT TAAGCCAAAG CATTGGAATA AATGATAATG TAGTAGCTGG AGAAAAAGAA ATACCAGTTA CAATAGTTGA TAAAAATGGT GAAAATCATA AGGCATTAGG AAATTTAACT GTTAAATCAA AGGTTGGAGT TGGACCTTTA GACTTTGGTT TTGATGAATC TAGAATTTAC TTTACAGTAA CAGATAGATT CTTTAATGGA GATAAGAATA ATGATGATCC TCATGGAAAT AACTATGATA AGAAGAATCC ATATACTTAT CATGGAGGAG ATTTAAAAGG ATTAACAGAT AAGATTCCAT ATTTAAAAGA ACTTGGAATA AACACAATTT GGATAACTCC TATTGTTGAG AATACTGATT TTAATCAAAT GTTCTCACAA GGGAAAACTC AATACTCATA TCATGGTTAC TGGGCTAAGG ATTTTGAAAA ATTAGATCCA CATTTAGGAA CTATGGATGA TTTAAAAACA TTAATAGATA CAGCACATGA TAGTGGAATA AAAATAATGG TTGATGTTGT TTTAAATCAT GCTGGCTATG GAATGAAAAA TAAAGAGGCT AATAGTGGAG CTAATAACTA TCCAACAGAG AAAGATAGAG CTAAGTTTAA AGGTATGTTT AGAGAGAATC CAGGAAATGA TTTTATAACT CAAGAGTCAG CAGGACTTCC AGATTTTAAA ACAGAGGATC CAGAAGTAAG AGAAAAATTA ATAGAGTGGC AAACAGGGTG GATTGAAAGA TTAAAGACTG AAAAAGGAAA TACTATTGAT TATTTTAGAG TTGATACAGT TAAGCATGTT GATAATACAA CTTGGAAGGC ATTTAAAAAT AAATTAACAG AAATAAACCC AAGCTTTAAA ACTATTGGTG AATATTTTGG AGCTGATATA AATAACGATG GAGGACAACT TCAAAATGGA CAAATGGATG CTTTATTAGA CTTTGGTTAT AAAGGAAAAG CAAGAGATTT TGTAAATGGA AATATTGAGG GAGCTTCAGC TTATTTAGAT GATAGAGCAA GTAAAATAAG CAATATCAAT TTAATGGGAC AATTCTTAAG TAGTCATGAT GAAGATGGAT TCTTAAAGAC TGTAGGAGAT GACTTAGGCA AACAAATGCT TGCTGCTTCT CTTCAAATAA CAGATAAGGG TATCCCTGTT ATATACTATG GAGAAGAACT TGGAATGTCA GGATGGAATG GCTTTGAACA AGGAGATCAA AATAGATATG ATATGGATTT TGAAAGATTA AATGATCCTA AGTATAAAAA GGTTCATGAT CATTATGAAA AACTTCTTAA TATAAGAAAA GAATACTCTA AGGTATTTTC AAAGGGAAAT AGAAAAACTA TTGCAGGAAA CAATGAAGAA GGGTATTCAG TAGTATTAAG AAGCTATAAT GGAAAAGAAA TTACGCCTAT GAATCTAAGT GAAAATAATG AAGAGAAAAA TATTACAAAT GGACAAAACC TATTTGTTGT ATTAAACACT AAAAATGAAG ATAAAGATAT AAGTTTTAAA ACAAATTTCA AAGAAGGAGA TAAGGTTAAA GACTTATATA GTGGAAATGA ATATTCAATA GGCAAAGATG GAAATGTAAC TGTAAAAGCC CCTTCAAGGG AAGATGGAGG AACTGCTATC TTAGCTCTTA AAAATGATAG TATATCACCT TCAGTTATAA ATAATGCTCC AGAAATAAAT GCTAAAGATG TTACATTAAC AGTTGGGGAT AAATTTGATC CAATGGAGGG TGTAACAGCT ATGGATAAGG AAGATGGAGA TATAACAAAG GATATTAAGG TTATAGAAAA TAATGTGGAC ACAGAAAAGT CTGGAGATTA TAAAGTAATT TACAAAGTAA CAGATAGTGA AGGGGCATCA AAAACTAAGG AAATTAATGT TAAGGTAAAT GAAAAAGAAG CCACTTCTCC AGAAGAAATT AAGGTAACTG GCGTCAAATT AAATAAGAAA GATTTAAACC TTAAAAAAGG TAAAAAATAT ACTTTAAAGG CTGAAATAAG TCCAAAAGAT GCAACAAACA AAGATGTTAC TTGGATATCA AGCAATCCAA AGGTTGTATC AGTTGATGAG AATGGAAATA TAGAGGCTAA ATCATCAGGA GAAGCTGAAA TAACAGTAAC AACTAAGGAT GGTGGATTTA AAGATACATG TAAAGTTAAG GTTAAACACT CAGGTTTCTT ACCTAATACT GGCTCAGTGG GCGGAAGAAT AGTTATTGTA ATAATTGGAG TTATAGCTAT TGGAATAGGT GTAGCAATGA TTTTTTACAA AAGAAAAGTA ATTAGAAGAA ATAGGCAGGA TAAATAA
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Protein sequence | MLVLFTFLFS FLPHMPVMAE VENNNTKANE KTLVKNESEA FAVVVGDFLK ESGNGSDWDP RNMNGVLKKY KNGLYEGALK LKAGNYNYKI AMNGTWDESY GNNGQNIALN LSKDSEVIFR LDYKNKKVDD SINNPDQFKT KAILAGNIKD IIDGASDWNP GNDTEKLDYI GGGMYKKTFP IKESARGKDI SLEYKVSYNG EWNNGEVAEN AKVVIPKGTK NITILSNYLD NYVKDSINNP SLSNTVSLIG TVREGNGDWD VNNKNFEMHN LDENRVLYSK VMKKGTYEYK GLVNHSWDNG GIPSQGNVTL NVPEDRNVIF VADLKNNKIY DSINNTKEIN NTKEINEALG IKGDENTGED NNDGNQGESE NKPDSVKSPV VNEDGTVTFS AKFNGDSLYL IGSMVSWDTS KQIEMKKGED GVFKVTIPLT GGVYEYKFKP NKDNWDNSFT DPSNKVMANG NSVLNMPGLE IGGESSVEVG SNTKLVAYIY DTEGNKKEAN VNWSLEEPVS GVSIKENTLK VSKDVDSSKK IKIKATDGKY SVSKELAILS QMYTYTINYY RFDGNYDNWN LWLWQTGGEG KGYDFNKKDE AEKGFTRAVY KFPSDKLNFL IRKGNWEDKD VGHDRTIEVK NGNNVEVWLI QGDENIYYDK KDVDTSPKLI SALMDSKTDL LVTSAGNIED SELDSFKLID KTDNKEIKTS AIKVSDNKVK LTLKKGFFST PEIDLSHDYE VSSNSFRATK VTMRKILDDP EYFYNGDDLG VTYKKDSSTF KLWAPTAKEV SLVLYDNEGT YDENGKVTDN TGGREISMKK ENKGVWSLKV DEDLEGKYYM YKVSFSDGKT NYAIDPYAKA VSANGQRGAI IDFSSTNPSE WGSVKKPPML NPTDSILYEM HVRDFSISKD SGINNKGKFE GIAEEGTKVP GTDVKTGIDH LKELGITTVH LLPSFDYASV NEISNKPQFN WGYDPQNYNS LEGSYSTNAE DPKSRVREFK DMVQTLHKNG IRVVMDVVYN HTYGIGQNSP FDPVVPGYFY RTNDEGKYTN GSGCGNEVAT ERPMVRKYIK DSVKYLAKEY DVDGFRFDLM GLIDTKTMSE LTTELRNEID PSLIIYGEPW QAGGSALPQE QQTLKGSQKG KGFAVFNDNF RNAIKGDSDG AGQGFATGAS GKEGAIVAGV KGSVDDFTDS PSETINYVTA HDNLNLWDKI IKAAGKEKAA GFLEMRDGVL TGEDANKYSS VQEAVNKKAK PYSVITETNP LDNEYVRRSI LTTAITITSQ GIPFFQAGDE FLRSKYGDHN SYKSPDAINK INWQNKEKFS GVFDYYQGLI SLRKSHPAFR MDTKAAIESN LVVTKANDNI VVFQLKNFAN GDSWKNIVVA YNGNNAEKEI SLPHEGDWNV VVNEHKAGTS VLESLKGVNS VKVAPLSAKV LYDESVEGEA QTPTSIDVTP SSLKLDIGAS NFLKAVIKDQ NGRIIPNAEI KWNVSDDSVI KVDSNNGKVT ALKEGKSIIT LNSGSLTKDV EVEVVHLVPS SLELNGPNQV YTGKDIQLNG IVKDQFGQVI SGANIEWFSS DESIAKVSTL GVVQGISEGK VKITAKSGKA KATKEIEVKK YTKKYIEFTY VRDDKNYDGW NIWTWQTGIN DGQQNFTQIK DGKAISKFEI APDVTQVGFV LRKGTGWDEK DPYESDRYIQ IDPSMNVTKV TVKSGVGEFF QVPAIKNAEI QEGNINFKYR DEALYEESNQ SSIDKVQVKV TSPGILFKDT KTYDMDYDSQ NEFFAYSLKD IKPGTYEYSF LVTKDGKTVE TEKQTIEYSP LKINGEVTFK NNQVNYDENA LVNLKLSGSD AKKENIKEVY MDLTNVGGPN KVLMDLNLLK DNSLSQSIGI NDNVVAGEKE IPVTIVDKNG ENHKALGNLT VKSKVGVGPL DFGFDESRIY FTVTDRFFNG DKNNDDPHGN NYDKKNPYTY HGGDLKGLTD KIPYLKELGI NTIWITPIVE NTDFNQMFSQ GKTQYSYHGY WAKDFEKLDP HLGTMDDLKT LIDTAHDSGI KIMVDVVLNH AGYGMKNKEA NSGANNYPTE KDRAKFKGMF RENPGNDFIT QESAGLPDFK TEDPEVREKL IEWQTGWIER LKTEKGNTID YFRVDTVKHV DNTTWKAFKN KLTEINPSFK TIGEYFGADI NNDGGQLQNG QMDALLDFGY KGKARDFVNG NIEGASAYLD DRASKISNIN LMGQFLSSHD EDGFLKTVGD DLGKQMLAAS LQITDKGIPV IYYGEELGMS GWNGFEQGDQ NRYDMDFERL NDPKYKKVHD HYEKLLNIRK EYSKVFSKGN RKTIAGNNEE GYSVVLRSYN GKEITPMNLS ENNEEKNITN GQNLFVVLNT KNEDKDISFK TNFKEGDKVK DLYSGNEYSI GKDGNVTVKA PSREDGGTAI LALKNDSISP SVINNAPEIN AKDVTLTVGD KFDPMEGVTA MDKEDGDITK DIKVIENNVD TEKSGDYKVI YKVTDSEGAS KTKEINVKVN EKEATSPEEI KVTGVKLNKK DLNLKKGKKY TLKAEISPKD ATNKDVTWIS SNPKVVSVDE NGNIEAKSSG EAEITVTTKD GGFKDTCKVK VKHSGFLPNT GSVGGRIVIV IIGVIAIGIG VAMIFYKRKV IRRNRQDK
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