| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1081 |
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| Symbol | |
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| ID | 4203006 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 1232192 |
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| End bp | 1233535 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 28% |
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| IMG OID | 638081962 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_695527 |
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| Protein GI | 110801410 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000165796 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAATA CAGAATCAAA TATTAAATAT TTAAAAGATG AACCAATAAA AAAAGCTATA
GCTCATCTAT CTATACCTAT GATGATAGGT ATGTCAGCTG GTACTATTTA TAATGTAATT
AATGCTTATT TTATAGGCTT AATGAATGAT ACAGCAATGA TTAGTGCTAT CACTTTAGGC
TTACCAATAT TCACTGTATT AATGGCATTT GGAAACATGT TCGGTGTAGG TGGAGGAACA
TTTATAACAA GATTAGTAGC AAAGAATGAA GATGAAAAAG CTAAAAAAGT CGCAGGCTAT
ACATTTTATG CAAGTATAAT ATCTGGAATA TTATTAGGAA TAATTGCCTT CTTATCAATT
GGACCAATAG TTAAATTATT AGGTGCAGAT GCAAATACAC TTAGTTATAC AACTCAGTAT
TCAACTACAC TTTTTACTGG TGGATTTTCA ATCATATTAA ATTTTGCTCT TGAACAAATA
GTAAGATCAG AAGGTGATTC TAAGGAATCT ATGTATGGAA TGTTCATAAG TGTAATTATA
AGCACAATAC TTGATGTATT ATTTATATTA ATCTTAAATA TGCATGTATA TGGAGCTGCT
CTATCAATTA TTTTAGCAAA TATAGCTTCT TCAATTTATT ATATTTGGTA TTTGGAAACA
AAGAGTGAAA ATCTTAAAGG ATTTCTACAC TTCTTTAAAC TTAGTTTAAA AGATCAAACT
GAAATATATA AAATTGGAGT ATCTGAATTA ATTCAATCTG CATTTTTAAT TGTAACCACC
TTATTATTAA ATAACTTTTC CATTCAACAT GGAGAAGGTG TTGTTGCAAG TTTTGGTATA
GCACTTAGAA TTGTTCAGAT TCCAGAGTTT TTTACCATGG GTATAGTCTT AGGGGTAATG
CCACTTATAG CATATAATTT TTCTAATAAA AATCTATCTC GCTTAAAGGA AAGTATAAAG
TATTCTACTT TATTTATATT TGTAATTTCA GTTTTATTTG CAGGGATTGT ATATATATTT
AGGAATCAGG TTATGCACGC TTTCTCAAGT GATACCTCTG TTCTTCAAAT AGGTTCATAT
ATCTTAGTTG CAATGTTAAT ATCAACTATA TTTAATGGAC TTACTGCTTT GTTTATGACA
ATATACCAAG CATCTGGCGA AGGAATAGCA ACAGGCATAA TGGCTATAAG TCAAGGATGT
TTATATATCC CTGTAGTAAT AACTCTTCAT TATTTTTATG GACTTCATGG ATTAATCTGG
TCCATGACAA TAACAGAAAT TACAACATGT TTAATAGGTA TAGTTTTATT TATTATCTAT
AACAAAAAAC TCAAAAAAAT ATAG
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| Protein sequence | MENTESNIKY LKDEPIKKAI AHLSIPMMIG MSAGTIYNVI NAYFIGLMND TAMISAITLG
LPIFTVLMAF GNMFGVGGGT FITRLVAKNE DEKAKKVAGY TFYASIISGI LLGIIAFLSI
GPIVKLLGAD ANTLSYTTQY STTLFTGGFS IILNFALEQI VRSEGDSKES MYGMFISVII
STILDVLFIL ILNMHVYGAA LSIILANIAS SIYYIWYLET KSENLKGFLH FFKLSLKDQT
EIYKIGVSEL IQSAFLIVTT LLLNNFSIQH GEGVVASFGI ALRIVQIPEF FTMGIVLGVM
PLIAYNFSNK NLSRLKESIK YSTLFIFVIS VLFAGIVYIF RNQVMHAFSS DTSVLQIGSY
ILVAMLISTI FNGLTALFMT IYQASGEGIA TGIMAISQGC LYIPVVITLH YFYGLHGLIW
SMTITEITTC LIGIVLFIIY NKKLKKI
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