Gene CPF_1080 details

Gene Information

• Locus tag: CPF_1080
• ID: 4202434
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: +
• Start bp: 1231448
• End bp: 1232005
• Gene Length: 558 bp
• Protein Length: 185 aa
• Translation table: 11
• GC content: 30%
• IMG OID: 638081961
• Product: putative lipoprotein
• Protein accession: YP_695526
• Protein GI: 110798737

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.00000186744
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAAA AAATATTATT AATTTTAATT ACAGTTTTTC TACTTGCTTT TTTTGTGGGG 
GGGTGTTCAG GAGAAGATCA ATCAAATAAT GGGCACAAAG AAACAACTGT TCAATCAGAA 
AACAATGAAT CAACAAAAAA TAATTATGAA ACTGAAGTTA GTAAAGATAA TGCTAAACAG 
GAGGATTCTG TTAAGGGAGG TAGTGATACT TCTAATAGTA ATTTAGAATC AGCTAATGAG 
AGTTTTAAAG AAGAGAGTAA AAGTTCAATA GTAGCAAATG AAGATTCTGG TAAAGAAGTT 
CAAAGTAGCT CTAATAAAAA TTATAATGAG AAAGTTACTA AAGAACCAAC AACTTCAGCA 
CCTAATAAAA ATGAATCATC AGATGATTCA GTACCAGTAA AAGAAGAAAG TTCAGATTAT 
GTATATGCAA ATGGAGGAAG ACACAAAAGT AATAAATATC ATAGTACTCC AACAGCACAT 
AGAATGGAAG GTGCTATAAA AATGACTAGA CAACAAGCTG AAGCTCAAGG GTATGTAGCT 
TGTAAAAAGT GCTTTTAA 

 

Protein sequence

MKKKILLILI TVFLLAFFVG GCSGEDQSNN GHKETTVQSE NNESTKNNYE TEVSKDNAKQ 
EDSVKGGSDT SNSNLESANE SFKEESKSSI VANEDSGKEV QSSSNKNYNE KVTKEPTTSA 
PNKNESSDDS VPVKEESSDY VYANGGRHKS NKYHSTPTAH RMEGAIKMTR QQAEAQGYVA 
CKKCF