Gene CPF_1073 details

Gene Information

• Locus tag: CPF_1073
• ID: 4201929
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: +
• Start bp: 1218551
• End bp: 1224979
• Gene Length: 6429 bp
• Protein Length: 2142 aa
• Translation table: 11
• GC content: 30%
• IMG OID: 638081954
• Product: discoidin domain-containing protein
• Protein accession: YP_695519
• Protein GI: 110801328

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.742063
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAAA AAATATCTAA AATTCTTATT GCATCAATGA TAATGTCAAA TGCAAGTCCT 
ATTTTGAATG TTTATGCTAG TGAGGTAATA AAGGAAAAGA TAAGTTCTAT AGAAGAAAGC 
GTAATAAATC AAGCATCTAT AAATCAATTC AATTTAAATA GCTACGAGAA TTTTGATGCA 
TATAATCAAA AGTACAAAGT ACAGAGAAAT GAAATAGTTT CAATAACAAA TAATGGTGGA 
CAATATTCAT CAAGCTCTAT AGATAAAGCT ATAGATGGTG ATTTATCTAC TCACTGGGAA 
ACAGGAAGAC AAAATAGTTC TGATTTTACA AATGAAGTTG TAGTTGAATT TAATGATTTA 
GAATCAATAG ATAGAATAGC ATATGCAACA AGACAAGATG GAGCAAGAGG AAAGGGATAT 
CCAACAGAGT TTGATATATA TGCTTCACAA ACTGGAAATG ATGATGACTT TAAATTAGTT 
TCTCAAGGGA CAAGCAAGTC AACAGGAAAC CTTATGGAAT TTAAGTTTGA TACAGTACAA 
GCTAAGAAAA TTAAATTTGT CTTTAAAGTA GCAGATAGAG ACTGGGCAAG TGCTTCAGAG 
TTTTGGTTTT ATAAGGAAGA TAAAATCATG GATAAGGTGA ATTCTATATT CATAAATGAA 
GAGAAAAACA AGGTGAATCC AGAATTTGAC ACTATAGAAA AATTAGATGT TTTTGAAAAT 
GAGATTAAAG ATCATCCATT TTATGAGAGT TTTAGAGAAA TAATAGAAAA TGCTAAGTTA 
GTTTTACAAG GAAACAATGT AGTTTACAAG GATGCCTTAG TAAGTAAGTT TAAAGATTTT 
AATGATGAAT CATTAAAAAA ATATAATGAA CTATTTAAGA TAAATACATC ATCAATAACG 
ACTAATGGAG GAAATTATGC AGAGAATACA ATAGATAGAG CTATTGATGG CGATGTTAAT 
ACAAAATGGC ATTCTGGAAA GCAAAATAGT TCTGATTTTA CAAATGAAGT AATAATTACT 
TTAGATAAAT TAGAGACTTT AGATAGAGTA GTTTACACAA ACTTAAATAT GAGAGGATTT 
GCTGAGGCCT TTGATATATA TACATCAAAG ACAACTTCTG GAGATACTTT TGAAAAAGTA 
ACATCAGGAA GCAGTGAAGT AACAAAAGGA TCAATAGAAA TTAAGTTTAA TCCAACAGAG 
GCAAGAAGAG TTAAATTTGT ATTTAAAAAA GGATATGAAA ATTGGGCTTT AGCATCAGAA 
TTTACTTTCT ATAAAGAAGA TCAGTTAAGA GATAAAATGA GTAGATTATT CACAGATAGC 
ACTATGAGTC AAGTATCTGA AGAATTTAAT ACTTTAGAAA AAATAGAAAA GTTAGAATCA 
GAAGCTAAGG AGCATCCTTT TTATAATGAT TATAAAGAAG AATTAGAGAA TGCTAAGTTA 
ATTATTGAAA ATAAAGAGGT TCAATATACT GATGCTAAAG TATCTGACTT TTTAAATCCA 
GATAATGAAT TACTTAAAGC TTATGATGCT ATCTATAAGT TAGATAAAAG CAAAATAAAA 
TCAATAAAAA CCAATGGTGG ACAATATGCA TCAGAATCTA TAGATAAAGC TATAGATGGA 
GATTTCAATA CAAAATGGCA TTCAGGAAAG CAAAATACAG AAAACTTTAC AAATGAAGTT 
GAAATAGAAT TAGAAGAATT AACTACATTA GATAGAATAG TATATACAGC ACCTCGTGGT 
TCAAATAGAG GATTTGCTGA AGCTTTTGAT ATTTATGCAT CAAGAACAAC TAAGGGAGAT 
AATTATCAAA AGGTAACTAG TGGCAATGCT AATATAACTC AAAATTCTGT AGAAATAAAA 
TTTAATCCAA CAGAATTTAA GAGAATTAAA TTTGTATTCA AAAAAGGTTA TGAAAACTGG 
GCTTGTGCTA GTGAATTTGG ATTATATAAA GAAGATAAAA CATCAGATAA AGTTGATAAA 
CTATTTACAA ATGGATTAAT GAATGAATTA TCAGAAGACT TTAATACAGA AGAAAAATTA 
GCTTCATTAG AGGAAGAGGT AAAAAATCAT CCCTTAGTAA ATTTATATAA GGAAAAATTA 
GAACTTGCTA AAGAAGTATT AGCAGGAAAT ACAGGATCTA CTGTATTTGA ATTACAAAGT 
AGAGGAAACT CAATTAAAGA ATCTCAAAAA AGAAAGGTTT GGAATTTCCA AGACTGGCAA 
CCAACTGGCT ATGCAGTAAA ATCTGGACAA GTAATAACTG TTTATGTTGA TGTGGAAGAT 
GGAAAGCCAA CACCAAAATT AGTATTTAAA CAAATGGATA GTCAGCATAA CGGAGATGTT 
ACTATAAGTT TAAGCAAAGG TAAAAATGTA ATAACTATAC CAGAAAAACC TACAAATGAG 
TTAAGACCAG GAACAGCTAA GGCAGGTGTA CTTTATACAA GTAACCCATA CACTTCAGAA 
GAACAAGGAA GAAAGCCTAA AATAAGAATA GAGGGTGCTA TAAACTATCC AAACTATATA 
AAAGGCATTG ATAATGATGA AGAAGTTATG AATGATCTTG AAGAATATGT TGATTTATTA 
AAAAAGGATC CTCAATTACC AGATGTATTT GATGTATTTA GTGATAAAAC ATTAGTTAAC 
GTAACTGCAA CCTATGCTTT AAATTGGTAT AAAAATAATA ATAAATTACC AAGTGAAACT 
GCAAATAAAA GTGATGAAGT AATTAAAGAA ACTATGAAAT ATTGGGGATT TGATGAATCT 
AGTGAGGTTA ACTCTGACTT TAACTTTAGA TATATAAGTA TGCTTAAATG GTTAGACAAT 
GGAGGCTTTA TGAATGCTGG AAATGGAATA ACAGGATTTA ATAAAGCAGA GCAAGGTGGA 
GCGTTAGGCG TAGATACTGG TTGGGGATTT ATGCATGAAA TGGGTCATAA TTTTGACACT 
AATAATAGAA CTATAGTAGA GGTAACTAAT AATATGCTTC CACTTCATTT TGAGAGAATT 
AAAGGTGTAC CATCTAATAT AACTAGACAA AATTTATGGG AAAGAAACAT ATTACCAAAG 
GTGGCTTTAG ATGATTATTC TAATAATGAA TATTATCCAG AAAGTGATAA ATCTTTATTA 
TCTCATGTAG CCCCTTTATG GCAATTACAG TTATATGATA AAACTTTCTG GCCAAGATTT 
GAACAAGAAT TTAGAAGTAG AGATATAGGT GGTGGAAGTT GGGAAAATAA ACACAATGCA 
TGGGTTATGG CTGCATCAGA TGTGTTTAAG TTAGACTTAT CAGAGCATTT TGAAAGACAT 
GGAATGGATG TATGGAAAGA GACTAAGGAA TATACATCTA AATATCCTAA ACCATCTAAT 
AAATTATGGT ACGCAAATGA TAAAATGTAC TTAAATAAAG GTGGAGTATT TACAGAAAAT 
CTTAAGTTCG AGGCAGAAGC AAAAATAGTA AACGGAAATG ATGTATCAAT TTCTTTTGAT 
ATAGATAATG AAAATAAAAA CAATGTTATA GGATATGAAA TATCTAGGGA TGGCAAAACA 
ATAGGATTTA CATCAACAAA TAATTTTGTT GATCACGGAG CTAATATAGA TGAAAACCAT 
GAATACAGTA TAGTTGCTTA TGACAATGAA ATAAATCCTA GTAAGCCTTA TAATTTTAAA 
TTACATGCTC CAAGTATTAG TGCACAACAA AAGGTTTTAA TAGCGCTTAA TGAAGAGTTT 
AACCCATTGG ATTACGTAAA AGCTTATAAT TACGAAGGAA ATGATATAAG CAATAAAATT 
GAAGTAATTA AGAATACTGT TGATAACACT AAGAAAGGTG AATATGAAGT TGTTTATAAA 
GTCACTGATG AAGAGGAAAC TAAAGAAAAA GCTCTTAAAG TTGAAGTAGT TAGTACTTAT 
GACTATTTAT CAGATGAAGA GTGGGAATCA GTAGAAACTC AATGGGGAAC TCCAAGAAGA 
AATACAAATA TAAAAGGTAG AGTAAATGGA GAAATTAAAA CCTTTGATAA GGGCATAGGA 
ATACATGCTA ATGGAAAAGT TGTATATGAT TTAGAGGGAA AAGATTATGA CAGATTTGAA 
GCTTTATTAG GTGTTGATCA AACAATAGGA GCTAACGATA ATTCAAGTAT TTCTTTTAAG 
GTTATAGCAG ATGGAGAGAC TTTAGAAACA ACTAAGGTTT TAAAATATAA TGATAATATG 
GTAGAAATAA ATATTCCAGT TAAAGGAATT AACAAATTAG AGATACAAGT TAGTGATAGT 
GGAAATGGAA ATACATCAGA CCACGGTATA ATAGTAAACC CTAAGTTATC AACTAATAAT 
GTAAAGCCTA AAATAAAAAC TGAAGATGCA GTAATAAATG TTAAGGATAA TTTTAATATA 
TTAGATGGTG TTACTGCTAA TGATGTAGAA GATGGTGATT TAACATCAAG CATAAAAGTA 
AAATCAAGTG ATTTTGAAGC AAATAGAGGT GGAATATACA CTGTAGTTTA TGAAGTTACA 
GATAAAGACG GAAACACAGT TACTAAGGAA AGAAAAATAT ACACAATAAC TACAGCTGAA 
AGTTTAAGTG ATAAGGAATG GAAATCAGCA TCATCTGGAT GGAGAGATGT AAAAAAAGAC 
TTAAGTGTTG AAGATAATAG AATAACTTTA CTTGGTGAAA ATGGACAAGA AGTAGAATAT 
GATAAAGGTC TTGGAACTCA TGCAAACTCA GAGATAGTTT ATGATTTATC AGGTAAAAAT 
TATGGAATGT TTGAAACTTA TGTTGGTGTA GATAGAGAAA TGAGAAACTC TAATGAGCCA 
TCAGTAATAT TTGAAGTTTA CGTTGATGGA AAAAAAGTAT TTGATAGCGG TGTTATGAAT 
GTAAACACTG AAAGAAAGCA TGTTTTAATT CCAATAGCAG GAGCAAGTGA GCTTAAATTA 
GTCGCTAAAG ATGGTGGAAA TGGAAATGCC GGAGATCATG CAGACTGGGC AGATGCAAAA 
GTTTATACTA CAAGCGATAA ACCAATATTA ACTGGGGAAG AGGTAGCCTT AAATATAGGT 
GATTCATTTA ACCCATTACA AGGAATGGTT GCTAATGATC CTGAAGATGG AGACATAACA 
AAGAATATAA AAGTTATAAA TAATAATGTA AATACAAAAA GAGGAGGTAA CTATGTAGTA 
TCCTATGAAG TTACTGATTC TCATGGAAAT AAAACTACAC TAGATAGAAA AGTATCAGTT 
GTTAATGCTT ATGATTATAT AAGTGATAAG AACTGGAAAT CAGCTAATTC AGGTTGGAGA 
AGTGTACAAA AAGATAGAAG TGTTGAAAAT AATACCATAA CTTTACTTGG TGAAGATGGA 
CAAGAAGTGG AGTATAAGAA AGGTATTGGA ACTCATGCAA CTTCAACAAT AGTATATGAT 
TTATCTGAGG GAAATTATAA GTTCTTTGAA GCATATGTTG GTGTAGATAG AGAGATGAGA 
AATTCTGATG TATCATCTTT AAGTTTTGAA GTTTATGCTG ATGGAAAAAA AGTATTTGAT 
AGTGGTGTTA TGAATTCAGA GACTCCAAGA AAGCATGTTT TAATTCCAAT AGTTGGAGTA 
AGTGAACTTA AATTAGTAGC TAAAGATGGT GAAAATGGAA ATGGAGGAGA TCATGCAGAC 
TGGGCAGATG CTAAGTTATT ATATGCAGAC TCTAAGGATT TTACTGCTTT AGAAAGAATA 
GTTGAGGAAG CAAGAGGAGT AGATGAAAAT TTATATACAG AGGAAAGCTT TAATAAATTA 
CAAGTTGCTC TAGAAAAGGC TAATAAAGTA TTAGAAACTC CTAATCCAGA ACAAGAGGTA 
ATAGACTCTA CTATTATAGA GCTTAGAGAG GCTATGGATA ATTTAGAGGC AGCTATTGAT 
TTAACAGAGG AAGTTAATAT ACCAGATAAT GAATTAAAAA GGGCTATAAA AGATCAATTA 
AATATATCAA GTGATGTAAT AACAAGAGGA GATATGAATA AGTTAACAAA CTTATCAGCA 
GTTGGATATG GAATAGCAAA CTTAGAAGGT TTACAATATG CTGTAAATAT AGAAGACTTA 
AATCTTGACT GCAATGAAAT AAGAGATATA TCTAAAATAA AAGGTTTAAA GAAGCTTAAC 
AATGTAAGCA TAAAAGAACA ATATATAGTT ATAAGATCAC CAGAAGAAGT TGAAGGAAAA 
TATGTTATAA ATGAATCCTT TGTAGGAAAA GATGGAGAAA GATTAGCACC TAAAGAAATA 
AACATAAGAA GAAATACAGG TGGACAAAGT ATTGACATAT CAAATGTTGA TGTTGAAAGT 
TCTTTAAATA ATGGAAATTT AGAACTAGAT ACTAAGCTTT TTAAAGAAGG AGTTAGTGGC 
ATATCAGCAG TATATAAGGA TTTAGATGGG AAATATGTAG CTACGCTTTC AACTATAGTA 
AGTAGATAA 

 

Protein sequence

MKKKISKILI ASMIMSNASP ILNVYASEVI KEKISSIEES VINQASINQF NLNSYENFDA 
YNQKYKVQRN EIVSITNNGG QYSSSSIDKA IDGDLSTHWE TGRQNSSDFT NEVVVEFNDL 
ESIDRIAYAT RQDGARGKGY PTEFDIYASQ TGNDDDFKLV SQGTSKSTGN LMEFKFDTVQ 
AKKIKFVFKV ADRDWASASE FWFYKEDKIM DKVNSIFINE EKNKVNPEFD TIEKLDVFEN 
EIKDHPFYES FREIIENAKL VLQGNNVVYK DALVSKFKDF NDESLKKYNE LFKINTSSIT 
TNGGNYAENT IDRAIDGDVN TKWHSGKQNS SDFTNEVIIT LDKLETLDRV VYTNLNMRGF 
AEAFDIYTSK TTSGDTFEKV TSGSSEVTKG SIEIKFNPTE ARRVKFVFKK GYENWALASE 
FTFYKEDQLR DKMSRLFTDS TMSQVSEEFN TLEKIEKLES EAKEHPFYND YKEELENAKL 
IIENKEVQYT DAKVSDFLNP DNELLKAYDA IYKLDKSKIK SIKTNGGQYA SESIDKAIDG 
DFNTKWHSGK QNTENFTNEV EIELEELTTL DRIVYTAPRG SNRGFAEAFD IYASRTTKGD 
NYQKVTSGNA NITQNSVEIK FNPTEFKRIK FVFKKGYENW ACASEFGLYK EDKTSDKVDK 
LFTNGLMNEL SEDFNTEEKL ASLEEEVKNH PLVNLYKEKL ELAKEVLAGN TGSTVFELQS 
RGNSIKESQK RKVWNFQDWQ PTGYAVKSGQ VITVYVDVED GKPTPKLVFK QMDSQHNGDV 
TISLSKGKNV ITIPEKPTNE LRPGTAKAGV LYTSNPYTSE EQGRKPKIRI EGAINYPNYI 
KGIDNDEEVM NDLEEYVDLL KKDPQLPDVF DVFSDKTLVN VTATYALNWY KNNNKLPSET 
ANKSDEVIKE TMKYWGFDES SEVNSDFNFR YISMLKWLDN GGFMNAGNGI TGFNKAEQGG 
ALGVDTGWGF MHEMGHNFDT NNRTIVEVTN NMLPLHFERI KGVPSNITRQ NLWERNILPK 
VALDDYSNNE YYPESDKSLL SHVAPLWQLQ LYDKTFWPRF EQEFRSRDIG GGSWENKHNA 
WVMAASDVFK LDLSEHFERH GMDVWKETKE YTSKYPKPSN KLWYANDKMY LNKGGVFTEN 
LKFEAEAKIV NGNDVSISFD IDNENKNNVI GYEISRDGKT IGFTSTNNFV DHGANIDENH 
EYSIVAYDNE INPSKPYNFK LHAPSISAQQ KVLIALNEEF NPLDYVKAYN YEGNDISNKI 
EVIKNTVDNT KKGEYEVVYK VTDEEETKEK ALKVEVVSTY DYLSDEEWES VETQWGTPRR 
NTNIKGRVNG EIKTFDKGIG IHANGKVVYD LEGKDYDRFE ALLGVDQTIG ANDNSSISFK 
VIADGETLET TKVLKYNDNM VEINIPVKGI NKLEIQVSDS GNGNTSDHGI IVNPKLSTNN 
VKPKIKTEDA VINVKDNFNI LDGVTANDVE DGDLTSSIKV KSSDFEANRG GIYTVVYEVT 
DKDGNTVTKE RKIYTITTAE SLSDKEWKSA SSGWRDVKKD LSVEDNRITL LGENGQEVEY 
DKGLGTHANS EIVYDLSGKN YGMFETYVGV DREMRNSNEP SVIFEVYVDG KKVFDSGVMN 
VNTERKHVLI PIAGASELKL VAKDGGNGNA GDHADWADAK VYTTSDKPIL TGEEVALNIG 
DSFNPLQGMV ANDPEDGDIT KNIKVINNNV NTKRGGNYVV SYEVTDSHGN KTTLDRKVSV 
VNAYDYISDK NWKSANSGWR SVQKDRSVEN NTITLLGEDG QEVEYKKGIG THATSTIVYD 
LSEGNYKFFE AYVGVDREMR NSDVSSLSFE VYADGKKVFD SGVMNSETPR KHVLIPIVGV 
SELKLVAKDG ENGNGGDHAD WADAKLLYAD SKDFTALERI VEEARGVDEN LYTEESFNKL 
QVALEKANKV LETPNPEQEV IDSTIIELRE AMDNLEAAID LTEEVNIPDN ELKRAIKDQL 
NISSDVITRG DMNKLTNLSA VGYGIANLEG LQYAVNIEDL NLDCNEIRDI SKIKGLKKLN 
NVSIKEQYIV IRSPEEVEGK YVINESFVGK DGERLAPKEI NIRRNTGGQS IDISNVDVES 
SLNNGNLELD TKLFKEGVSG ISAVYKDLDG KYVATLSTIV SR