| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0971 |
|---|
| Symbol | |
|---|
| ID | 4203222 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 1122294 |
|---|
| End bp | 1122710 |
|---|
| Gene Length | 417 bp |
|---|
| Protein Length | 138 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 638081853 |
|---|
| Product | toxin secretion/phage lysis holin |
|---|
| Protein accession | YP_695418 |
|---|
| Protein GI | 110801339 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4824] Phage-related holin (Lysis protein) |
|---|
| TIGRFAM ID | [TIGR01593] toxin secretion/phage lysis holin |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.332324 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAATA TATTTGATTA TTTAAAGATG GGGATTGTAG CAATAGGAAC TTTATTTACA
TGGCTATTAG GAGCATGGGA TACCCCTTTA GTTATACTTA TAGTTTTAAT GTCTTTAGAT
TATATTACTG GTATTACTAA AGGTTATGTT AATAAAGATT TAAGCAGCAA TATAGGACTT
AAAGGAATAG CAAGAAAGGG AATTATTTTC ACTATTCTTA TAGTAGCTGT AATGTTAGAC
AGACTTTTAA ATACAGGAAA TTGGATATTT AGAACTTTGG TATGCTATTT TTACATAGCT
AATGAAGGTA TAAGTATTAT AGAAAATGCA AGTAAACTAG GTGTACCAGT ACCATCTAAA
TTAAAAAATG CGTTAATACA ACTTAAAGAA GATAAAGAGG ATCATAAGAA ATTATGA
|
|---|
| Protein sequence | MENIFDYLKM GIVAIGTLFT WLLGAWDTPL VILIVLMSLD YITGITKGYV NKDLSSNIGL
KGIARKGIIF TILIVAVMLD RLLNTGNWIF RTLVCYFYIA NEGISIIENA SKLGVPVPSK
LKNALIQLKE DKEDHKKL
|
|---|
| |