| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0871 |
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| Symbol | |
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| ID | 4201770 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 1034911 |
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| End bp | 1036083 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 26% |
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| IMG OID | 638081754 |
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| Product | IS605 family transposase OrfB |
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| Protein accession | YP_695321 |
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| Protein GI | 110800784 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0675] Transposase and inactivated derivatives |
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| TIGRFAM ID | [TIGR01766] transposase, IS605 OrfB family, central region |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000854897 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGAAGT TGAAAAAGGC ATACAAGATG GAGATTAATC CTACTGATAA GCAAAAATCT
AAAATACACC GAACTATTGG TGTATCAAGA TTTATATATA ATTTCTACAT TGCTCGTAAT
AAAGAAATTT ACGAGAGAGA AGGAAAGTTT GTTAGTGGAA TGGATTTTTC AAAGTGGTTA
AATAATGAAT ATATTCCTAA TAATCAAGAA ATGAAGTGGA TTAAAGAAGT ATCTTCAAAA
GCTACTAAAC AAGCTATTAT GAATGGAGAT AAATCTTTTA GAGATTTCTT TAAAAAAGCT
AAAGGCTTTC CAAAATTTAA AAAAAAGAAA AATCAAGATG TAAAAGCTTA TTTTCCTAAG
AATAATAAGA CTGATTGGAC TATTGAAAGG CATAGAGTCA AAATACCAAC TTTAGGATGG
ATAAGATTAA AAGAATTTGG TTATATTCCT GTAAATTCAA TAGTCAAAAG TGGTACAGTA
AGTCAAAAAG CTGATAGATA TTATGTATCT ATATTGGTTG AAGAAACAGA TATAAAAATA
TCTAATCCCA ATAATGCAGG CGTAGGAATT GATCTAGGTA TTAAGGAATT TGCTGTATGT
AGTGATGGAA TTAAGTTTAA AAATATAAAT AAAACATCTA CTGTTAAAAA AGTAGAAAAG
AAATTAAAAA GAGAGCAAAG AAAACTTTCA AGAAAATATG AAAGTTTAAA AATAAGAAAT
AAAAATATAA AAGAAGGGAG AGCTACTCGT CAAAATATTC AAAAACAAAT AATCAAAGTA
CAAAAACTTC ATCAGAGATT AACAAATATA CGAACTGATT ATATAAATAA AATAGTATCT
TCAATTATAA AGCAAAAACC AAGCTATATA ACAATTGAAG ATTTAAATGT TAAAGGAATG
ATGAAGAATA AGCATTTATC TAAAGCTATT GCAAGTCAGA AGTTCTTTGA ATTTAAAACT
AAGTTAACAG TTAAATGCAA AGAAAATCAT ATAGAACTTA GAATAGTGGA TAGATTTTAT
CCATCATCAA AGACTTGTAG TCAATGTGGA AAGGTTAAGA AAGATTTAAA ACTATCAGAT
AGAATTTATA AATGCGATTG CGGATTTACT ATTGATAGAG ATTTAAACGC AAGTATTAAT
CTTAAAAATG CTAAAGAATA TAAGATAGCT TAA
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| Protein sequence | MKKLKKAYKM EINPTDKQKS KIHRTIGVSR FIYNFYIARN KEIYEREGKF VSGMDFSKWL
NNEYIPNNQE MKWIKEVSSK ATKQAIMNGD KSFRDFFKKA KGFPKFKKKK NQDVKAYFPK
NNKTDWTIER HRVKIPTLGW IRLKEFGYIP VNSIVKSGTV SQKADRYYVS ILVEETDIKI
SNPNNAGVGI DLGIKEFAVC SDGIKFKNIN KTSTVKKVEK KLKREQRKLS RKYESLKIRN
KNIKEGRATR QNIQKQIIKV QKLHQRLTNI RTDYINKIVS SIIKQKPSYI TIEDLNVKGM
MKNKHLSKAI ASQKFFEFKT KLTVKCKENH IELRIVDRFY PSSKTCSQCG KVKKDLKLSD
RIYKCDCGFT IDRDLNASIN LKNAKEYKIA
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