| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0718 |
|---|
| Symbol | |
|---|
| ID | 4201317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 853216 |
|---|
| End bp | 853980 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 26% |
|---|
| IMG OID | 638081603 |
|---|
| Product | DeoR family transcriptional regulator |
|---|
| Protein accession | YP_695170 |
|---|
| Protein GI | 261876170 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000222584 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTATGG AAGAAAGATT AGAAGAGATT TTAAGAATAT TAAAAAAGGA TGGAAAAGTT
TTAGTTAAAG ATTTAAGTGT TAAATTTAAT GTTACTGAAG GAATGATCAG AAAAGATCTA
CAAAAACTTG AGCAAGAAGG ATTATTAAAA AGAACTTATG GTGGAGCTAT ATTAGAAAGA
CAAACTATTC ATGATGATAA TATAAAGCCT AGATTAATGA AAAACTTAGG TGAAAAGGAC
ATTATAGCAA AATTAGCATT AAATGAAATT AAAGATGGAG ATTTTATATT TTTAGATGCA
TCAACAACAA ACTATTCAAT TGCTAGTATG CTTTTAAATA CAAAAAAGCA GGTAACTGTA
GTAACAAATA TGAATAGGAT AGCAATACTT TTTGATTCAC ATTCATCTAT AGATGTAATT
TGTATTGGTG GTATTTATAA TAAAAACTTA GGGGGAACTA TAGGAAGTAA AGCTATAGAG
GATGTTAAAA GTTATAGATT TCATAAGGCG TTTGTAGGGG TTGGAGGAAT AAATTTAGTA
GAAGACTTCA TAAGTAACTT TAACTTAGAA GAAGCTAGTA TGAAAAATGC TATAATTAAA
TCTAGCTTAA AAACTTATTT AGTTGCTGAA AATGAAAAGT TTTATATTGA TGGTGTTTGT
GAATTTGCTA AATGTGATGA TATTGACTTT ATAATAAGTG ATAAAAAGCC TAATGAAGAA
ATTTTAAAGC TTTTAAAAGA AAGAAATATT TCTATAATAT ACTAG
|
|---|
| Protein sequence | MFMEERLEEI LRILKKDGKV LVKDLSVKFN VTEGMIRKDL QKLEQEGLLK RTYGGAILER
QTIHDDNIKP RLMKNLGEKD IIAKLALNEI KDGDFIFLDA STTNYSIASM LLNTKKQVTV
VTNMNRIAIL FDSHSSIDVI CIGGIYNKNL GGTIGSKAIE DVKSYRFHKA FVGVGGINLV
EDFISNFNLE EASMKNAIIK SSLKTYLVAE NEKFYIDGVC EFAKCDDIDF IISDKKPNEE
ILKLLKERNI SIIY
|
|---|
| |