Gene CPF_0712 details

Gene Information

• Locus tag: CPF_0712
• ID: 4202934
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: +
• Start bp: 846213
• End bp: 846692
• Gene Length: 480 bp
• Protein Length: 159 aa
• Translation table: 11
• GC content: 28%
• IMG OID: 638081597
• Product: ECF subfamily RNA polymerase sigma factor
• Protein accession: YP_695164
• Protein GI: 110800215
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.0820498
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTTTCTC AAGCAAAGAA AGGAGATAAG GATGCCTTTT TAAGTCTTAT AGATGAGAAT 
AGATTAAGTA TCTATAGGGT TGCTAGGGGA ATTTTAAATA ACAAGGAAGA CATAGAAGAT 
GCACTTCATA ATACAATAAT AAAATCTTAT GAGAAGATAG GAACTTTAAA AAAGGATGAA 
TTCTTTAAAA CTTGGATAAT AAGGATTTTA ATAAATGAGT GTAATTTGAT ATTAAGAAGA 
AATAAAAAGA CCATATTTTT AGATAAGTTA GAAAATGAAA AGTCCTATAG TGATGACTAT 
GGGAATATTG AGTTAACATC TGTAGTTAAT TCATTAAGCG AGGATTTAAG AATAACTACA 
GTATTATATT ATTTTGAAGA TATGTCTACT AAAGAGATAT CAGAAATGTT AAATATAGCT 
GAAGGAACAG TAAGATCAAG ACTGGCTAGG GCAAGAGAAA AGCTTAGAGA TTTTATATAA 

 

Protein sequence

MVSQAKKGDK DAFLSLIDEN RLSIYRVARG ILNNKEDIED ALHNTIIKSY EKIGTLKKDE 
FFKTWIIRIL INECNLILRR NKKTIFLDKL ENEKSYSDDY GNIELTSVVN SLSEDLRITT 
VLYYFEDMST KEISEMLNIA EGTVRSRLAR AREKLRDFI