| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0670 |
|---|
| Symbol | thiC |
|---|
| ID | 4201374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 797635 |
|---|
| End bp | 798945 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 638081555 |
|---|
| Product | thiamine biosynthesis protein ThiC |
|---|
| Protein accession | YP_695123 |
|---|
| Protein GI | 110798961 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
|---|
| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTATA CAACTCAAAT GGATGCTGCT AAAAAAGGAA TAATAACAAA GGAAATGCAA
GTAGTTTCAG AAAAAGAAGG AATTAATATT GAAACTTTAA TGAATTTAAT GGCTGAAGGA
AAAATTGTAA TACCAGCTAA TAAAAATCAT AAAAGTATAA GTGCAGAAGG TGTTGGACAA
GGGTTAAGAA CTAAAATAAA TGTTAACCTA GGAATTTCAA AGGACTGTGC CAATATAGAA
TTAGAGTTAG AAAAAGTTAA AAAAGCAATA GATATGAATG CAGAATCTAT AATGGATTTA
AGTAATTATG GTAAAACTTA TGATTTTAGA AAAAGACTTG TAGAAGTTTC TACGGCTATG
ATAGGAACTG TACCAATGTA TGATGTAGTA GGTTTCTATG ATAAAGAGCT TAAAGATATA
ACTGTTGATG AATTTTTTGA AGTTGTAGAA AAACATGCAA AGGATGGAGT TGACTTTGTT
ACTATACATG CTGGATTAAA TAGAGAAACA ATTGAAACTT TTAGAAGAAA TAAAAGACTT
ACTAATATAG TTTCTAGAGG AGGATCTCTT CTTTTTGCAT GGATGGAATT AAATAATAGA
GAAAATCCTT TCTATGAATA TTTTGATAGA TTATTAGATA TATGTGAAAA GTATGATTTA
ACTTTAAGTT TAGGGGATGC TTGTAGACCA GGTTCAATAG CTGATGCAAC TGATGCTGTA
CAAATCAAAG AATTAATTAC TCTTGGAGAG CTAACAAAAA GAGCTTGGGA AAGAAATGTA
CAAGTAATAA TAGAGGGTCC AGGGCATATG GCAATGAATG AAATAGAAGC TAATGTTTTA
TTAGAGAAAA AATTATGCCA TGGAGCACCA TTTTATGTTT TAGGACCAAT AGTAACTGAT
ATTGCACCAG GATATGATCA TATAACAAGT GCTATAGGAG GGGCTATGGC AGCTTCTTAT
GGAGCAGATT TTCTTTGTTA TGTAACACCA GCAGAACATT TAAGACTTCC TAATTTAGAG
GATGTAAGGG AAGGAATAGT TGCCACAAAG ATAGCGGCTC ATGCAGCTGA CATAGCAAAA
GGAATTTCTG GGGCAAGGGA CATAGATAAT AAAATGAGTG ATGCTAGGAA AAGACTAGAT
TGGGACGAGA TGTTTTCTTT AGCTATAGAT AGTGAAAAAG CCATTAGATA TAGAAAAGAA
TCTACTCCTG AACATAAAGA TAGTTGTACA ATGTGTGGAA AAATGTGCTC TATAAGAAAT
ATGAATAAGA TTCTAGAAGG AAAGGATATA AATCTTTTAA GAGAAGACTA A
|
|---|
| Protein sequence | MNYTTQMDAA KKGIITKEMQ VVSEKEGINI ETLMNLMAEG KIVIPANKNH KSISAEGVGQ
GLRTKINVNL GISKDCANIE LELEKVKKAI DMNAESIMDL SNYGKTYDFR KRLVEVSTAM
IGTVPMYDVV GFYDKELKDI TVDEFFEVVE KHAKDGVDFV TIHAGLNRET IETFRRNKRL
TNIVSRGGSL LFAWMELNNR ENPFYEYFDR LLDICEKYDL TLSLGDACRP GSIADATDAV
QIKELITLGE LTKRAWERNV QVIIEGPGHM AMNEIEANVL LEKKLCHGAP FYVLGPIVTD
IAPGYDHITS AIGGAMAASY GADFLCYVTP AEHLRLPNLE DVREGIVATK IAAHAADIAK
GISGARDIDN KMSDARKRLD WDEMFSLAID SEKAIRYRKE STPEHKDSCT MCGKMCSIRN
MNKILEGKDI NLLRED
|
|---|
| |