| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0642 |
|---|
| Symbol | |
|---|
| ID | 4202096 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 772148 |
|---|
| End bp | 772927 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 638081527 |
|---|
| Product | DeoR family transcriptional regulator |
|---|
| Protein accession | YP_695095 |
|---|
| Protein GI | 110800332 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACG CAAAAGGCTT TGTTTTTAAA AGACAACAGG CAATATTGAA ATATTTAAAA
GAAAATAAAT TTGCTAAAAC AGAAGAATTA GCTACTTTAT TAAAAACATC TAATATAACA
ATAAGAAGAG ATTTTCAAAA TCTAGAAAAA GAAGGGGTTA TAAGAAGAAA ATACGGTGGT
GCTGAACTTA TTGAAGGAGC TTTGAGTGAA GACCCATATT TTAATCATAC CAACATTGAA
AGAGAAAAAA TTAAAGATTC TATAGCTAAA AAAGCTGCTG AATTTATAGA AGATGGAGAT
AGTATATTTA TAAACTCTAG TTCAACTGCA ATAAAACTCT TAGAATATAT AGAAGATAAA
AGAGTTATGG TAATTACAAA CAATGGCAAA ATATTAGGTA TGAATTTATC ACCTAATGTA
GAGATAATAC TTACAGGCGG TGAAGTATAT GGAAGAAAAC AATCTATGGT TGGTGATATA
GCCACTCAGA TAATTTCTAA AATAACTGCA ACTAAATGTT TTATAGGGGT TAGTGGTATA
AATGCTAATA CAGGAATCAG TACATCTGTT CTCCAGGAAA CCACAGTAAA TATGAAGATG
CTTGAAAATT GTAATGGGCC AACTTTTGTC TTAGCAGATA ACTCAAAAAT AGGAATACAT
CATAATTTTT CTAGTGGAGA TATTTCTAAA GTTAATTATG TAATCACAAA TGAAATTGAA
GATGATAAAT CTGAACTTGA AAAATTAAAA GAAAAAGGAG TAAAAATAAT ATTCTCGTAA
|
|---|
| Protein sequence | MKNAKGFVFK RQQAILKYLK ENKFAKTEEL ATLLKTSNIT IRRDFQNLEK EGVIRRKYGG
AELIEGALSE DPYFNHTNIE REKIKDSIAK KAAEFIEDGD SIFINSSSTA IKLLEYIEDK
RVMVITNNGK ILGMNLSPNV EIILTGGEVY GRKQSMVGDI ATQIISKITA TKCFIGVSGI
NANTGISTSV LQETTVNMKM LENCNGPTFV LADNSKIGIH HNFSSGDISK VNYVITNEIE
DDKSELEKLK EKGVKIIFS
|
|---|
| |